KEGG   Sphingomonas sp. NIC1: A7E77_04765Help
Entry
A7E77_04765       CDS       T04479                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
snj  Sphingomonas sp. NIC1
Pathway
snj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:snj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A7E77_04765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:snj03400]
    A7E77_04765
Enzymes [BR:snj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A7E77_04765
DNA repair and recombination proteins [BR:snj03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A7E77_04765
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANC86253
LinkDB All DBs
Position
989516..992020
Genome map
AA seq 834 aa AA seqDB search
MPETDPLARYNAKRDFAKTAEPAGTLAPGNGNSFIVQKHDATRLHWDFRLEADGVLKSWA
VTRGPSLDPDEKRLAVRTEDHPLSYATFEGTIPEGEYGGGTVMLWDRGTWAPVAGKSAKD
IEKGHLHFVLDGERMKGEWLLIRLKPRGKEKRENWLLRKIDDAHAGGTDTLVEEGLTSVA
TGRTMAEIADGKSSPASHGRGTARAAGGGGAAPRATRAKKGKKAKLPAFQNPQLCTLVDS
VPAGAGWVHEMKYDGYRALVAVADGTAKVYTRNGLDWTDRFGGIAEAAAALPVSSALIDG
EIVAFKDGKPDFSTLKDAIGAGGAMTLFAFDLLSLDGEDLTGLTTVERKERLRGIVGDDG
RLQFSEHVLGSGEQLFDAMCREGMEGVVSKRADAPYTGGRNRTWLKAKCTRRQEFVILGW
VPSDKRRGFKSLLLGVREGAGKAGSWRYTGKVGTGFDTATMDDLAERLATLKTDAPPVDA
TALKPFRAAIRGARWVRPELVAEIAFAETTPDGLLRHASFLGLRCDKPADTVVVEVPEPA
PDQGDTPAIHVKVSNRDRVIFPESNVTKSELADYYAALSPIMLPWVARRPLSLVRCPQGR
AKQCFFQKHDAGSFGEHVHHVDVREKDGSVEPYLYVDSADGLVACVQMGGIEFHGWGSHV
DAIEMPDRLVIDLDPDEGLGFADTKAAADHVRAQLAEIGLVSFPLLSGGKGVHVVVPLTP
QAEWPAVKDFADRFARALAAAEPDRFVAVATKAKRKGRIFIDYLRNQRGSTAIMPYSARA
RAGAPVSAPVSWTELRDIDTAARWTVRDANELLKRATSRALAGWGVADQVLPDV
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
gtgcctgagacggacccgctcgcccgctacaacgccaagcgcgatttcgcgaagacggcg
gagccggcgggtacgctcgcgcccggcaacggcaacagcttcatcgtccagaagcatgac
gccacccgcctccattgggacttccgcctcgaagcggacggcgtcctcaaaagctgggcg
gtgacgcgcggccccagcctcgatcccgacgaaaagcggctcgcggtgcggaccgaggac
catcctttgtcgtatgcgacgttcgaaggaacgatccccgaaggggaatatggtggcggc
acggtgatgctgtgggaccgcggaacctgggcgccagtcgcgggcaagtccgccaaggac
attgagaagggccatctccacttcgtcctcgatggcgagcggatgaagggcgaatggctg
ctgatccgcctgaaaccgcgcggcaaggaaaagcgcgagaattggctgttgcgtaagatc
gacgacgctcacgccggcgggacggacacgttggtcgaggaaggcctcaccagcgtcgca
accggccgcacgatggcggagatcgccgacggtaagtcctcccctgcttcgcatgggagg
ggaaccgcccgcgcagcgggtggtggaggggcagccccgcgcgcgacgcgtgcgaaaaag
ggcaagaaggccaaactccccgccttccagaacccccaactctgcaccttggtcgacagc
gtgcccgccggcgccggctgggtgcacgagatgaaatacgacggctatcgcgccctcgtc
gcggtcgcggatggaacagccaaggtctacacccgcaacggcctcgactggacggacaga
tttggggggatagcagaagctgccgccgccctccccgtgtcctccgcgctgatcgacggc
gagatcgtcgcgttcaaggatggcaagcccgatttctcgacgctgaaggacgcgatcggt
gcgggcggcgcgatgacgctgtttgccttcgatctgctgtcgctcgacggcgaggatttg
accggcctgacgacggtggagcgcaaggagcggctgcgcggcatcgtcggcgacgacgga
cggctgcaattctccgaacacgtcttgggctcgggcgagcaattgttcgatgcgatgtgt
cgcgaggggatggaaggcgtcgtgtcgaaacgcgccgatgcgccctataccggcggccgc
aaccggacgtggttgaaggcgaaatgcacgcgacgccaggaattcgtcatcctcggctgg
gtgccgtccgacaagcggcggggcttcaagtcactgctgctgggcgtgcgcgaaggcgct
ggcaaggcagggagctggcgctacaccggcaaggtcggcacgggcttcgataccgcgacg
atggacgatctggccgaacgccttgcgacgctcaagacggacgcaccaccggtcgacgcg
accgcgctgaagcccttccgggccgccatccgcggcgcgcgctgggttcgccccgaattg
gtcgcggagatcgcctttgccgaaacgacgcccgatggcctgctgcgccacgcgagcttc
ctgggcctgcgctgcgacaaacccgccgatacggtcgtcgtggaagtgcccgaacccgcc
cccgaccaaggggacacgccagcgatccacgtcaaggtcagcaatcgcgaccgcgtgatc
ttccccgaaagcaacgtcaccaagagcgagctcgccgattattacgcggcgctcagcccg
atcatgctgccctgggtcgcgcgccgcccgctcagcctggtccgttgtccgcaaggccgc
gccaaacaatgctttttccagaagcacgacgcgggcagcttcggcgaacacgtccaccat
gtcgacgtgcgcgaaaaggacggcagcgtcgagccctacctctacgtcgacagtgcggac
ggtctggtcgcctgcgtgcagatgggcggcatcgaatttcacggctgggggagccacgtc
gacgcgatcgagatgcccgaccgactggtgatcgatctcgaccccgacgagggcctgggc
ttcgcggacaccaaggcggccgccgatcacgtccgcgcgcagcttgccgagatcggcctc
gtcagcttcccgttgctgtcgggcggcaaaggcgtccatgtcgtcgtgccgctcacgccc
caggcggaatggcccgcggtgaaggacttcgccgaccgcttcgcgcgcgcgctggccgcg
gcggagccggaccgcttcgtcgcggttgcgaccaaggcgaagcggaagggccgcatcttc
atcgactatctgcgcaaccagcgtggcagcaccgcgatcatgccctattcggcgcgggcc
cgggccggcgcaccggtgtcggcgcccgtgtcgtggaccgagctgcgcgacatcgacacg
gcggcgcgctggaccgtccgcgacgcgaacgaactgctgaagcgcgcgacgtcgcgggcg
ctggccggctggggcgtggcggatcaggtgctgccggacgtgtga

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