Sphingomonas nostoxanthinifaciens: K8P63_11140
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Entry
K8P63_11140 CDS
T08862
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snos
Sphingomonas nostoxanthinifaciens
Pathway
snos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K8P63_11140 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snos03400
]
K8P63_11140 (ligD)
Enzymes [BR:
snos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K8P63_11140 (ligD)
DNA repair and recombination proteins [BR:
snos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K8P63_11140 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
VMAP-M20
Motif
Other DBs
NCBI-ProteinID:
UAK22987
LinkDB
All DBs
Position
2356306..2358891
Genome browser
AA seq
861 aa
AA seq
DB search
MARKAATTAADPLATYNAKRDFTQTAEPAGTLASDGGHLFMVQKHDATRLHWDFRLELDG
VLKSWAVTRGPSLDPDDKRLAVRTEDHPLSYATFEGTIPKGQYGGGTVMLWDRGTWTPVP
GKDPRKTLAEGHLHFTLDGARMKGEWLMIRLKPRGNEKHENWLLRKIADDHAGGSGDLVD
RALTSVTTGRTMAEIAQGKGGAREWQSKQGDALGSSEVVASPPSSSRRTSGSRSRSARKS
DHAAVLDPGLRRADEKNSAMPVFQAPQLATLVDHVPTGTEWLHEVKYDGYRTLIAVGGGT
AKAYTRTGLDWSDRFGPVVAAAAALPHAALIDGEVVALDKDGRPSFQALQASLKDGSGTL
AYFAFDLLSLDGEDLTALPNVARKERLAALLKGVVAPLHYSDHITGNGEKLFERLCKEGM
EGVISKRADAPYRVGRRTQSWLKIKCLRRQEFVIVGWTPSDKGRGFRSLLLGVHDGDALR
YAGKVGTGFDMKTIDLLLDRMTPLARKTAPVAAPRAAVRGAHWITPQLVAEIAFTEVTDE
GVLRHPSFIALRDDKPQAEVVLETPLPAPSATTPDMAGVTITNPDRVIYPESGITKGALA
DYYARLADPILDWLGDRPTSLVRCPQGRAKQCFFQKHDAGSFGDAVRHVPIREKDGHDEP
YLYLDDARGLLTCVQMGAIEFHGWGSKVADVEKPDRLVFDLDPDEGLGFVEVRHAAMQLR
DVLGEMGLASWPMLSGGKGVHVVVPLDAGRAWPEVKDFANRFALAISEAHPKRFTANMKK
VERRGRIFLDWLRNQRGATAVMPYTARARPNAPVAAPVGWDELETIDTAARFTIADAAEL
LDRAAGPLRDWGRAQQRLPDL
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaaggcagccaccaccgccgccgatccgctcgcgacctacaacgccaagcgc
gacttcacccagacggccgagcccgccggcacgctcgccagcgacggcggccacctcttc
atggtgcagaagcacgacgccacccgcctccactgggattttcggctggaactcgacggc
gtgctgaaaagctgggcggtgacgcgcggcccctcgctcgatcccgacgacaagaggctg
gcggtgcggaccgaggatcaccccctctcctacgccacgttcgagggcacgatccccaag
ggccaatatggcggcggcacggtgatgttgtgggatcgcggcacgtggacgccggtgccc
ggcaaggatccgcgcaagacgctcgccgagggtcatctccacttcacgctcgatggcgcg
cggatgaagggcgaatggctgatgatccggctgaagccgcgcgggaacgagaagcacgaa
aactggctgctgcggaagatcgccgacgaccatgccggcggcagcggcgatctggtcgac
cgcgcgctcacctcggtcacgaccggccgcaccatggcggagatcgcacagggcaaaggt
ggcgcccgcgaatggcagtcgaaacagggagatgcactgggttcttcggaagttgtggca
tcccctccttcgtcatcccgacgaacgtcgggatccaggtcgcggagcgcccggaaaagc
gaccacgccgccgtcctggatcccggcctgcgccgggctgacgagaagaacagcgccatg
cccgtcttccaggcaccccaactcgccacgctggtggatcacgtcccgaccggcacggaa
tggctgcacgaggtgaaatatgacggctaccgcacgctgatcgcggtcggcggcggcacg
gccaaagcctatacgcgcaccgggctcgactggtcggatcggttcggcccagtcgtcgcc
gccgcggcggccctgccccatgcggcgctgatcgacggcgaggtcgtcgcgctcgacaag
gatggccgacccagcttccaggcgctgcaggcgagcctcaaggacggcagcggcacgctc
gcttacttcgcgttcgacctgctgtcgctcgacggcgaggatctgaccgccctccccaat
gtcgcgcgcaaggagcggctggcggcgctgttgaagggtgtcgtggccccgctccattat
tcagatcatatcacaggaaatggcgagaagctgttcgaaaggctgtgcaaggaagggatg
gaaggcgtcatctccaagcgcgccgacgccccctatcgcgtcggccgccgcacccagagc
tggctcaagatcaaatgcctgcgccggcaggaattcgtcatcgtcggctggacgccgagt
gacaagggtcgcggtttccggtcgttgctgctcggcgtgcacgatggcgacgcgctgcgt
tatgccggcaaggtcggcaccggcttcgacatgaagacgatcgacctgctgctcgatcgc
atgacgccgctcgcgcgcaagaccgcgccggtcgcggcgccgcgcgcggcggtgcgcggc
gcgcactggatcacgccgcagcttgtcgccgagatcgccttcaccgaggtgaccgacgaa
ggcgtgctgcgccacccgagcttcatcgcgctgcgtgacgacaagccgcaggccgaggtg
gtgctcgaaacgccgctgcctgcccccagcgcgacgacgcccgacatggctggggtcacg
atcaccaatcccgatcgcgtcatctatccggagagcggcatcaccaagggcgcgctggcg
gactattacgcccgcctcgccgatccgatccttgactggctgggcgatcgcccgaccagc
ctcgtccgctgcccgcaggggcgcgccaagcaatgcttcttccagaagcacgatgccggc
agcttcggcgatgccgtgcgccacgtgccgatccgcgagaaggacgggcatgacgagccc
tatctctatctcgacgatgcgcgcgggctgctcacctgcgtccagatgggcgcgatcgag
tttcacggctggggctcgaaggtcgccgatgtggagaagcccgacaggctggtgttcgat
ctcgatcccgacgaggggctgggcttcgtcgaggtgcgccacgccgccatgcagttacgc
gacgtgctgggcgagatggggctggcgagctggccgatgctgtcgggcggcaagggcgtc
cacgtcgtcgtgccgctcgacgccggccgggcatggcccgaggtgaaggatttcgccaac
cgcttcgcgctcgcgatcagcgaggcgcatccgaaacgcttcaccgccaacatgaagaag
gtcgagcggcgcggccgcatcttcctcgactggctgcgcaaccagcgtggcgcgaccgcg
gtcatgccctataccgcgcgggcgcggcccaacgcaccggtagcggcgccggtcggctgg
gacgagctggagacgatcgacaccgccgcgcgcttcaccatcgccgacgcggccgaattg
ctcgatcgcgccgccgggccgctgcgcgactggggccgcgcgcagcagcgcctgcccgac
ctctag
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