Streptomyces nodosus: CP978_05340
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Entry
CP978_05340 CDS
T06839
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
snq
Streptomyces nodosus
Pathway
snq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CP978_05340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snq03400
]
CP978_05340
Enzymes [BR:
snq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CP978_05340
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CP978_05340
DNA repair and recombination proteins [BR:
snq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CP978_05340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
zf-TFIIB
zf-RRN7
Zn-ribbon_8
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QEV43106
UniProt:
A0A0B5DG52
LinkDB
All DBs
Position
complement(1186885..1187745)
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AA seq
286 aa
AA seq
DB search
MPELPEVEALKDFLTGRLVGHELVRVLPVAISVLKTYDPPVTALEGREVTAVHRYGKFLD
LEAGALHLVTHLARAGWLQWKDRLPDGAPRPGKGPLALRVALETGEGFDLTEAGTQKRLA
VYVVRDPREVPGIARLGPDPLAADFDEPRLARLLEGERRQIKGALRDQSLIAGVGNAYSD
EILHAARMSPFKLAASLSPQETHRLYEALRATLTEAVGRAHGLAAGHLKAEKKSGLRVHG
RTGEPCPVCGDTIREVSFSDSSLQYCPTCQTGGRPLADRRLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaggtcgaagcgctcaaggacttcctgaccggccgtctcgtcggc
catgagctggtgcgggtgctgcccgtggcgatcagcgtgctcaagacgtacgacccgccg
gtcaccgccctcgagggccgcgaggtcaccgccgtgcaccggtacggcaagttcctcgat
ctggaggccggcgcgctgcacctggtgacgcatctggcgcgtgcgggctggctccagtgg
aaggaccggctgcccgacggtgcgccccgccccggcaagggcccgctcgccctgcgggtc
gcgctggagacgggggagggcttcgacctgacggaggccggcacccagaagcggctcgcg
gtgtacgtcgtgagggatccccgggaggtccccggcatcgcccgtctcggccccgacccg
ctggccgccgacttcgacgagccgcgcctggcgcggcttctcgagggcgagcgccggcag
atcaagggcgcgctgcgcgaccagagcctgatcgcgggcgtcggcaacgcctacagcgac
gagatcctgcacgccgcgcggatgtccccgttcaagctcgccgcctcgctgtcgccgcag
gagacacaccgcctgtacgaggcgctgcgggcgacgctcaccgaggcggtggggcgcgcg
cacggtctggccgccgggcatctcaaggcggagaagaagagcgggctgcgggtccacggc
cgtaccggggagccctgcccggtgtgcggtgacacgatccgcgaggtgtccttcagcgac
tcctcgctgcagtactgcccgacctgccagacgggcggcaggccgctggcggaccgcaga
ctctcacggctgctgaagtag
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