Sodalis praecaptivus: Sant_0885
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Entry
Sant_0885 CDS
T03004
Symbol
ygdH
Name
(GenBank) Lysine decarboxylase family protein
KO
K06966
pyrimidine/purine-5'-nucleotide nucleosidase [EC:
3.2.2.10
3.2.2.-]
Organism
sod
Sodalis praecaptivus
Pathway
sod00230
Purine metabolism
sod00240
Pyrimidine metabolism
sod01100
Metabolic pathways
sod01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
sod00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
Sant_0885 (ygdH)
00240 Pyrimidine metabolism
Sant_0885 (ygdH)
Enzymes [BR:
sod01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.10 pyrimidine-5'-nucleotide nucleosidase
Sant_0885 (ygdH)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PpnN_C
DUF4478
Lysine_decarbox
LDcluster4
DNA_gyraseB_C
Motif
Other DBs
NCBI-ProteinID:
AHF75965
UniProt:
W0HUU8
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All DBs
Position
complement(981944..983308)
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AA seq
454 aa
AA seq
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MITHISPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGIQTDSSKELLERFQD
FDINVLRRERGVKLELVNPPEEAFVDGRIIRSLQANLFAVLRDILFVNGQIASAGRHQHL
NLANASHITNLVFSILRNARALHVGEAPNMIVCWGGHSINENEYRYARAVGNQLGLRELN
ICTGCGPGAMEAPMKGAAVGHAQQHYKEGRFIGMTEPSIIAAEPPNGLVNELVIMPDIEK
RLEAFVRLGHGIIIFPGGVGTAEEFLYLLGIMMDPENADQMLPLVLTGPEESADYFRVLD
EFIVSTLGPQARRYYSIIIDDAAEVARRMKKAMPEVQENRRRSGDAYGFNWSLRIAHDLQ
HPFEPSHENMANLNLHREQPAERLAAALRRAFSGIVAGNVKEYGIHAIEQYGPYQLHGDV
EIMRHMDTLLQGFVAQHRMKLPGSAYLPCYEIRL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ttgattacgcatatcagcccgctgggctccatggatttattgtcacaactcgaagtggac
atgctcaaacgtaccgccagcagcgatctctaccggctgtttcgcaactgttcgctggcg
gtgctcaattccgggatccagaccgacagcagtaaagagctgcttgagcgctttcaggat
tttgatattaacgtgctgcgccgcgagcgcggcgtgaagttggagctggtgaacccgccg
gaagaagcgtttgtcgatggccgcatcattcgctcgctgcaggccaacctgtttgccgta
ttgcgggatatcctgtttgttaacggtcaaatcgccagcgccgggcggcatcaacatctc
aatctggccaacgcatcccatatcaccaatctggtattttccatcctgcgcaacgcccgc
gcgctgcacgtgggcgaagcgccaaatatgattgtctgctggggcgggcattccatcaac
gaaaacgaatatcgttatgcccgcgccgtcggcaatcagcttggcctgcgcgagctcaac
atttgcaccggctgcgggccgggcgcgatggaagcccccatgaagggcgccgcggtgggc
catgcccagcagcactataaagaggggcggtttatcgggatgaccgaaccctccattatc
gccgccgaaccgcccaacggcctggtgaatgagctggtgatcatgccggatattgaaaaa
cgcctcgaagctttcgtgcgccttggccacggtatcatcattttccccggcggcgtcggc
accgcggaagagttcctgtatctgctgggcatcatgatggatccggaaaacgccgatcag
atgctgccgctggtgcttaccggaccggaggagagcgccgactatttccgcgtgctggat
gaatttatcgttagcacgcttggcccccaggcccgccgctattattccataatcatcgat
gatgccgctgaagtggcccgccgcatgaaaaaggcgatgccggaggtccaagaaaaccgc
cgccgcagcggcgatgcttacggctttaactggtcgttgcgcatcgcccatgatttgcag
catcccttcgagcccagccatgaaaatatggccaacctcaatctgcaccgcgaacagccg
gccgaacgcctggcggccgcgctgcgccgtgccttctccggcatcgtcgccggcaacgta
aaggagtatggcattcacgctatcgagcagtacgggccttaccaactgcatggcgatgtg
gaaatcatgcggcatatggatacgctactgcagggtttcgttgcccagcaccggatgaag
ctgcccggcagcgcctacctcccctgctacgaaatccgtctttaa
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