KEGG   Shinella oryzae: K6301_11440
Entry
K6301_11440       CDS       T08112                                 
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
  KO
K03089  RNA polymerase sigma-32 factor
Organism
soj  Shinella oryzae
Brite
KEGG Orthology (KO) [BR:soj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:soj03021]
    K6301_11440 (rpoH)
Transcription machinery [BR:soj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     K6301_11440 (rpoH)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_11 Sigma70_r4_2 Sigma70_r3 DUF3431
Other DBs
NCBI-ProteinID: UPA23793
LinkDB
Position
2334695..2335600
AA seq 301 aa
MARNTLPSITSGEGGLNRYLDEIRKFPMLEPQQEYMLAKRYQEHDDRNAAHQLVTSHLRL
VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRS
WSLVKMGTTANQKRLFFNLRRMKSKIQAIDDGDLRPDQVKEIATKLKVSEEEVVSMNRRL
SGDASLNAPIKASEGDSGQWQDWLVDDHDSQEQTLIEQDELETRRAMLDRAMRVLNDRER
RIFEARRLAEDPVTLEELSSEFDISRERVRQIEVRAFEKVQEAVQKYAAEQANAVRVIED
A
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcccgcaatacactgccgtctattacgtctggagaaggtggtctcaaccgctatctc
gacgaaatccgtaaatttccgatgcttgagccgcagcaggaatacatgctcgccaagcgc
taccaggaacacgacgaccgcaacgccgcccatcagctcgtgacgagccaccttcgtctc
gtggcgaagatcgccatgggctatcgcggctacggcctgccgatcggcgaagtcgtctcc
gagggcaatgtcggcctgatgcaggccgtcaagaagttcgatcccgagcgtggtttccgc
ctggcgacctacgccatgtggtggatcaaggcgtcgatccaggaatatatcctgcgttcg
tggtcgctcgtgaagatgggcacgaccgccaaccagaagcgcctgttctttaacctgcgc
cggatgaagagcaagatccaggcaatcgacgacggcgatctgcggcccgatcaggtcaag
gaaatcgcgaccaagctgaaggtctccgaggaagaagttgtctcgatgaaccgccgcctg
tccggcgacgcatcgctgaacgcgccgatcaaggcatccgaaggcgattccggccagtgg
caggattggctcgtcgacgatcacgacagccaggagcagacgctcatcgagcaggacgaa
ctagaaacgcgccgtgcgatgcttgaccgcgccatgcgcgtgctgaacgaccgtgagcgc
cgcattttcgaggcccgccgccttgcggaagatccggtcacgctggaagaactctcctcc
gagttcgatatcagccgcgagcgcgtccgccagatcgaggtccgcgccttcgagaaggtg
caggaggccgtccagaaatacgcggctgagcaggccaacgccgtccgcgtgatcgaagac
gcctga

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