Shinella oryzae: K6301_18905
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Entry
K6301_18905 CDS
T08112
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
soj
Shinella oryzae
Pathway
soj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K6301_18905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_18905
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K6301_18905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
UPA27614
LinkDB
All DBs
Position
pZ25:594600..595397
Genome browser
AA seq
265 aa
AA seq
DB search
MAPRAFWKGYLKLSLVTCPVAMSPAISQEDKVRFRTLNGKTGNPVVSRYVDAVTGKEVSE
DDEVKGYPRGEDDYVMLEDDEIEAVALESTRTIDIETFVPRETIEWIWYDSPHFLVPNDT
VGEEAFSVIREAMASTGTVGISRLVLYRRERAVMLEPRGKGIVLWTLRYGDEVRNEAEYF
SDLNQAKPDTKALALVKTLIKERTKAWDPKMVDDPVQAKLLDIIAAKKKGRKRPAARKAQ
PKTSGNVINIMDALRKSIKAEGKGK
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcgtgccttctggaagggctatctcaagctttcgctggtgacgtgccctgtg
gccatgtcgccggcgatttcccaggaagacaaggttcgctttcgaaccttgaacggcaag
accggcaatccggtggtcagccgctacgtcgatgccgtcaccggcaaggaagtcagtgag
gacgacgaggtgaaaggctacccgcgcggcgaagacgactatgtcatgctggaggacgac
gagatcgaggcggtcgcgctggaaagcacgcgcacgatcgacatcgagaccttcgtgccg
cgcgagacgatcgagtggatctggtacgactcgccgcatttcctcgtaccgaacgacacg
gtcggcgaagaggcgttctccgtcatccgcgaagccatggcatcgacaggcaccgtcggc
atctcccggctcgtcctctatcgccgcgaacgggcagtgatgctcgagccgcggggcaag
ggcatcgtgctgtggaccctgcgttacggcgacgaggtgcgcaatgaggcggagtatttt
tccgatctcaaccaagcgaagccggacacgaaggcgctcgccctcgtcaagacgctgatc
aaggagcgcaccaaggcctgggatccgaaaatggtcgacgatcccgtgcaggcgaaactg
ctcgatatcatcgccgccaagaagaaggggcgcaagcgtccggccgcgcgcaaggctcaa
ccgaaaacgtccggcaacgtcatcaacatcatggacgccctgcgcaagagcatcaaggcc
gagggcaaaggcaagtag
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