Shinella oryzae: K6301_18910
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Entry
K6301_18910 CDS
T08112
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
soj
Shinella oryzae
Pathway
soj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K6301_18910 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_18910 (ligD)
Enzymes [BR:
soj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K6301_18910 (ligD)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K6301_18910 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UPA27969
LinkDB
All DBs
Position
pZ25:complement(595400..597949)
Genome browser
AA seq
849 aa
AA seq
DB search
MATLDVYRQKRDFKTTSEPRGRKARTGGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTK
GPSLVPSEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGTWEPIGDVRKAYAKG
HLEFTLDGEKLHGRWHLVRMHGKPADKRENWLLIKGDDEFAMPEGEDDLLEERPESVKTG
REIADVAGEEPGWSSKTGRIRKPSRPKTQKKVAKPEETAEPAPDPSDIKGARKATLPDFL
PPTLATLASAPPAGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTKKFGKAVPDALR
DLPVGTAIMDGELVVETGAGASDFSALQADLSAGRDDRFTFYLFDLLYLDGYDLTRLPLE
QRKSLLEKLVMGTEGPLRYSGHFDENGALVLRHACRLSLEGVVSKLRDAPYRAGRSKGWI
KSKCSARQEFVIGGYVPSTVSRKAIGSLVLGVYKNGKLEPVGRVGTGFSALVAEDIFKRL
SRLRTEESPFGRKLTAEEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLREDKPAQE
VVAEMPKSTKAKAEKAPKPQRRTVRLTHPDRVYWPAEGVTKEGLADYYTEVWRYIAPHIV
GRPLALLRAPSGIDGQTFFQKHVWKGINANILQVQDPAEDDEPYVAINDLDGLMGLVQAA
VLEIHPWGSTLADWERPDRIIMDLDPGEGVDWQAVIDAAEETRKRLEAAGLNAFVKTSGG
KGLHVCAPLKPSARWPAVKAFCKGVADAMAKDSPDKYVSTITKSKRRGKILIDYLRNQRG
MTAVAPYSTRARPGAAVSMPLAWEELSPDIGPAYFTVDNTPTRLQSLKADPWADFTEAAR
PLKASKQKA
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctggatgtctatcggcagaagcgggatttcaagaccacgtcggagccgcgc
ggcaggaaggcgcggacgggcggaaacagctttgtcatccagaagcacgatgccacacgg
ctgcactatgattttcgcctcgaaatggacggcgtgctgaagagctgggcggtgacgaag
ggtccgagcctggttccgagcgaaaaacgacttgccgtgcatgtggaggaccatcctctc
gattacggcgacttcgaagggaccattcccaagggtgaatatggcggcggcaccgtcatc
gtctgggatcgtggcacatgggagccgatcggcgacgtacgaaaagcctatgcaaaggga
catctcgaattcacgctcgacggtgaaaagctgcacgggcgctggcatctcgtgcgcatg
cacggcaaacccgccgacaagcgcgaaaactggttgctgatcaagggcgatgacgagttc
gccatgcctgaaggcgaggacgacctgcttgaggagcggcctgaatcggtgaaaacggga
cgcgagatcgcggatgtcgccggagaggagcccgggtggtcgtcgaagaccgggcgtatc
cggaagccatcgaggccgaaaacgcaaaaaaaggtcgcgaagccggaggagacggccgag
ccggcgccggacccatccgatatcaagggcgcgcgcaaggcgacgctgccggatttcctg
ccgccgacgttggcaacccttgccagcgcgccgccggccggcgagcgatggctgcatgag
atcaagttcgacgggtatcgccttcaggcccgcatcgaggcgggccgggtcaagctgctc
acccgcagcggcctcgactggacgaagaaattcggaaaggccgtaccggatgccctgcgc
gacctgcctgtcggtacggccatcatggacggtgaacttgtcgttgagaccggcgccggc
gcatccgatttttccgctttgcaagccgatctcagcgcgggccgcgacgatcgttttacc
ttctatcttttcgatctcctctatctcgacgggtatgacctgacccgtctgccgcttgag
caacgcaaaagcctgctcgaaaagcttgtcatgggaacggaaggacctttgcgctacagc
ggtcatttcgacgagaatggcgcgctcgttctacgccatgcgtgccgcctcagtctggag
ggcgtggtatcgaagctgcgcgatgcgccctatcgggccggccgcagcaagggctggatc
aaatcgaaatgctcggcccggcaggagttcgtcatcggcggctacgtaccgtccaccgtc
tcccgcaaggcgatcgggtctttggtgctcggcgtctacaagaatggtaagctggagccg
gtcggtcgtgtcggcacggggttttccgcactcgtcgcggaggatatcttcaagcgtctc
tcgcgcctcaggacggaggaaagcccgttcggacgaaagctgacggcggaggaggcgcgc
caggcccgctatgtgcggcccgagctggtggcggaggtggaattccgggcctggacggcc
gatggccaccttcggcatgcatccttccgcggtctgagggaagacaagcccgcacaggag
gtcgttgccgagatgcccaaatcgacaaaagccaaggcggagaaagcgccaaagccgcag
cgccgtaccgtgcgcctcacgcatccggaccgggtctactggccggcagaaggcgtcacc
aaggaggggctcgcggattattataccgaggtctggcgctatatcgcgccgcatatcgtc
ggccgcccgctcgcgctcctgcgcgcgccgagcggcatcgatgggcagaccttcttccag
aaacatgtctggaagggcatcaatgcgaacattctccaggtgcaggaccccgcggaggac
gacgaaccctatgtcgccatcaacgatctcgacggcctgatgggcctcgttcaggctgcg
gtgcttgaaatccacccttggggctcgacgctcgccgactgggagcgacccgaccgcatc
atcatggacctcgatcccggtgaaggcgtcgactggcaggcggtcatcgacgccgcagag
gagacgcgaaagcgcctcgaagctgccgggttgaatgccttcgtcaagacctccggcggc
aagggtctgcatgtctgcgcaccgctcaagccgtctgcgcgctggccggccgtcaaggca
ttctgcaagggcgtcgccgatgccatggcaaaggacagccccgacaaatatgtctcgacc
atcaccaagtcgaagcgccgcggaaaaatcctgattgactacctgcgaaaccagcgcggc
atgacggcggtcgcgccatactcgacccgagcccggcccggtgccgccgtttccatgccg
ctggcctgggaggaactcagccccgatatcggcccggcctatttcacggtcgacaacaca
ccgactcgcctccagtcgctgaaggccgatccatgggcggatttcaccgaggccgcccgg
ccgttgaaggcttcaaagcagaaggcctga
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