Shinella oryzae: K6301_18915
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Entry
K6301_18915 CDS
T08112
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
soj
Shinella oryzae
Pathway
soj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K6301_18915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_18915
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K6301_18915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
UPA27615
LinkDB
All DBs
Position
pZ25:complement(597952..598803)
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AA seq
283 aa
AA seq
DB search
MAPRANWKGFLKVGELVCPVALYTAASTSDRIAFHMLNRKTGHRLHREFIDSETGKTVER
EDQVKGYEVGDGDYIALDPEEIAAALPESDKTLEIEAFIACDDIDDLYFDKPYYLTPSDR
HGDEAFALIREGMKKSNVAALAETVLFRRMRTVLIRPEGQGLVATTLNYDYEVRSAEAAF
SDLPDVKLKGEMLELAEHIINTKKGRFDPKGFDDRYDAALAEVVKAKIEGRKIKPVKPKT
EGKVIDLMEALRQSAGKSEKPAKRKTKKPPAARKPAAGRRKAG
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
gtggcgccaagagcgaactggaaaggtttcctgaaagtgggcgagctggtctgtccggtg
gcgctttacaccgccgcgtcgaccagcgatcgcatcgcctttcacatgctcaatcgcaag
accggtcatcggcttcaccgggaattcatcgacagcgagacgggcaaaaccgtcgaacgc
gaggatcaggtgaagggctatgaggtcggcgatggcgattatatcgcgctcgacccggag
gaaatcgcggccgccctcccggagagcgacaagacgttggagatcgaggcgttcatcgcc
tgcgatgacatcgacgatctgtatttcgacaagccctactatctcacgccctccgaccgt
cacggcgatgaggcctttgcgctgatccgtgagggaatgaagaagtcgaacgtggccgcc
cttgcagaaaccgttctcttccggcggatgcgcacggtgctgatccgcccggagggtcag
ggccttgtcgcaaccacgctcaactacgactacgaagtgcgttcggccgaggcggcattc
tcggatctacccgacgtcaagctcaagggcgaaatgctggagcttgccgaacacatcatc
aacacgaaaaagggccggttcgatccgaagggcttcgatgatcgctacgacgccgcgctg
gcggaggtggtgaaggcgaagattgagggacggaagatcaagcctgtcaagccgaagact
gaaggcaaggtcatcgacctgatggaggcgcttcgccaaagtgcgggcaagagcgagaaa
ccggcgaagcgcaaaacgaagaagcctccggccgcgcgcaaaccggcggcgggccgtcgg
aaggcaggatga
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