Shewanella oneidensis: SO_1894
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Entry
SO_1894 CDS
T00099
Symbol
liuD
Name
(GenBank) methylcrotonyl-CoA carboxylase biotin-binding subunit LiuD
KO
K01968
3-methylcrotonyl-CoA carboxylase alpha subunit [EC:
6.4.1.4
]
Organism
son
Shewanella oneidensis
Pathway
son00280
Valine, leucine and isoleucine degradation
son01100
Metabolic pathways
Module
son_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
son00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SO_1894 (liuD)
Enzymes [BR:
son01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
SO_1894 (liuD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
ATP-grasp
Biotin_lipoyl_2
HlyD_3
RimK
MCC_alpha_BT
HlyD_D23
ATP-grasp_3
ATPgrasp_ST
GARS_A
GCV_H
APO_RNA-bind
Motif
Other DBs
NCBI-ProteinID:
AAN54946
UniProt:
Q8EFS2
LinkDB
All DBs
Position
complement(1990431..1992515)
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AA seq
694 aa
AA seq
DB search
MLTKQMLTNSMFTKLLIANRGEIACRIIKTAQAMGVRTVALYSDADKNARHVAMADESFY
LGGSAPADSYLKGDLIIAIAKKAQAQAIHPGYGFLSENADFARKCEAAGIVFVGPGSDAI
DAMGSKSAAKAIMTAAQVPLVPGYHGDDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRI
VEHEGEIMDAINSARREAASSFGNDKLLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCS
IQRRHQKVVEEAPAPGLSDELRAQMGEAAVAAAKAIDYVGAGTIEFLLDTDNSFYFMEMN
TRLQVEHPVTEMVTGQDLVKWQLMVASGQPLPLKQDEVRIHGHAFEVRIYAEDPQNEFLP
ASGKLNFLREPEQSKYVRIDSGIRENDVISNFYDPMIAKLIVWDESRPRALQRLVHALES
YQISGLKHNIEFLANIAEHPAFAKADFSTDFINRYGDALIGSASSEADTALAFAALYQVL
ARKEAAKAQAINSADPDSPWGQVSGFRLNSVSQHSIALLDDAHELQQLVLLDFGDHYQLS
HNRSSQHQLSQSAADGQVSKSLSGELKQDLLLAEINGHKSKVPVSAQGDDFTLFLPSGSY
HFRAVKTQVVEAESSNEDKLKAPMNGTVVTHLVDVGAEVKAGQGLLVMEAMKMEYTIEAP
FDGIVTEFYFKAGELVSDGAVLLHVEPKAQSEEA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaagcagatgttgactaacagcatgttcactaagcttttaattgctaaccgt
ggtgaaattgcctgccgcattatcaaaaccgcgcaggccatgggcgttcgcaccgttgct
ttatattccgatgccgataaaaacgcgcgccatgttgccatggctgacgaatcgttttac
ttaggtggcagcgccccagcagattcttacctcaagggcgacttgattattgcaatcgcc
aaaaaagctcaggcgcaagccattcacccaggttatggcttcttatcggaaaacgccgac
tttgcccgcaagtgtgaggcggccggaatcgtgtttgttggcccgggcagcgatgccatc
gatgccatgggcagcaagagcgcggccaaagccattatgacggcggcgcaagtgccttta
gtgccaggttaccatggtgacgatcaaaccgatgccaccctcaaggccgaagccttaaaa
atcggtttcccgatgctgattaaagccgcctacggtggcggtggcaaaggtatgcgtatc
gttgagcatgaaggcgaaatcatggacgccatcaactctgcgcgccgtgaagcggcctcc
tccttcggtaacgataagttattgatggagcgttatttacgccagcctcgccatgtcgaa
gtccaagtgtttgccgatacctttggcaatgcaatttacttatcggatcgcgactgctcg
attcaacgccgccatcaaaaagtggtcgaagaagcgccagccccaggtttaagtgatgag
ctgcgcgcccaaatgggtgaagctgccgtagccgccgccaaggctatcgattatgttggc
gcgggaaccattgaattcctgttagataccgacaatagcttctactttatggagatgaat
actcgtctgcaggtagaacacccagtgaccgaaatggtgactggccaagacttagtcaaa
tggcagttgatggtcgccagtggtcagcctttaccgctcaaacaggacgaagtgcgtatc
cacggccacgcctttgaggtacgtatttatgccgaagatccgcaaaatgagtttttaccc
gccagcggtaagctcaatttcctgcgcgagcccgagcaaagcaaatacgtgcgtattgat
tccggcatccgtgaaaacgatgtgatcagtaacttttatgatccgatgatcgccaaactg
attgtgtgggatgagtcgcgtccacgtgcgctgcaacgcctagtgcatgccctcgagtcc
tatcaaatcagtgggcttaaacacaatattgaatttttggccaatattgccgagcatccc
gcctttgccaaggccgactttagcaccgactttatcaaccgttacggcgatgcgctgatt
ggcagtgcttcgagcgaagccgacactgcgcttgcctttgccgcgctgtatcaagtgctt
gcccgtaaagaagccgccaaggcacaggcgattaatagcgccgatccagactcgccttgg
ggccaagtcagtggctttagactcaacagtgtcagccagcattctattgctctgctcgac
gatgcccacgagttacaacaattggtattgttagactttggcgatcactatcaactatca
cataatcgatcgtcacagcatcaattatcccaatccgcagccgatggccaagtgagtaaa
tccctaagtggtgagcttaagcaggatttactgttagccgaaatcaacggccataagagt
aaagtgcctgtcagcgctcagggcgatgattttacgctgtttttaccatcaggcagttat
cacttcagggcggttaaaacccaagtggttgaggcagaatcgagcaatgaagataagctc
aaggcaccgatgaacggcactgtcgtgactcacttggtcgatgttggtgcagaggttaag
gcgggacaagggctactggtgatggaagcgatgaagatggaatacaccattgaagccccc
ttcgacggtatcgttaccgagttctactttaaggcaggtgagcttgtgagtgatggcgcc
gtgctgctccatgttgagcccaaagcccagagcgaggaagcctaa
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