Schaalia odontolytica: FBF35_06780
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Entry
FBF35_06780 CDS
T05977
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
soo
Schaalia odontolytica
Pathway
soo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FBF35_06780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soo03019
]
FBF35_06780
03016 Transfer RNA biogenesis [BR:
soo03016
]
FBF35_06780
Enzymes [BR:
soo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FBF35_06780
Messenger RNA biogenesis [BR:
soo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FBF35_06780
Transfer RNA biogenesis [BR:
soo03016
]
Prokaryotic type
tRNA degradation factors
FBF35_06780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
KH_1
S1
RNase_PH_C
KH_2
PCB_OB
KhpA-B_KH
aRib
DUF1773
KH_5
Motif
Other DBs
NCBI-ProteinID:
QCT35740
LinkDB
All DBs
Position
complement(1536586..1538931)
Genome browser
AA seq
781 aa
AA seq
DB search
MMEGSDIIAAEAIIDNGRFGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPK
DQFDFFPLTVDVEERQYAAGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEV
QVVETVLTIDPDDAYDVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELE
RSVFNIVVAGRIVTKEDGSEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKP
FIKVLCEAQLKVAEKASKETVEFPLFLDYTDEEYAAVEEYAAEKVAQALLTEGKLARDEA
VDAVKEEMLEALAERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAE
VEVLPRVHGSALFQRGETQILGITTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEV
GRVGSPKRREIGHGDLAERALVPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSL
LQAGVPLRAPVAGIAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQ
LDTKLDGIDSQVLRAALAQARDARLAILDLINQAIDGPDEMSPNAPRIITVKVPVDKIGE
VIGPKGKMINQIQDETGADVTIEDDGTVYIASSDGASAEAARTMVNQIANPQMPEVGERF
VGTVVKTTSFGAFVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGD
RGKLSLHAVIDGEAGELEAAEGEQTEQRRERRDRSERRERRPRTRTRRRRDDEREDGASE
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaggctccgacatcatcgccgcagaggcgattatcgataacggccgttttggc
aagcgcaccgtgcgcttcgaaaccggccgtctcgccaagcaggccgccggctccgccctg
gcctacctggacgattccaccaccgttctgtccgccaccacggtgggcaagaaccccaag
gaccagttcgacttcttcccgctgaccgtcgacgttgaagagcgtcagtacgccgcgggt
cgcatccccggttccttcttccgccgcgaaggccgcgcgggcaccgaggccatcctggcc
gcccgcctcatcgaccgcccgctgcgccccggcttcgtcaagggcctgcgcaacgaggtc
caggtcgtcgagaccgtcctgacgatcgatccggacgacgcctacgacgttctggcgatt
aacgccgcgtccatgtccacccagatcgccggcttgcccttcaccggcccgatcggcggc
acccgcctggcgctcatcgacgaccagtgggtcgcgttcccgcgctggagcgagctcgag
cgttccgtgttcaacatcgttgtcgcgggtcgcatcgtcaccaaggaagacggctccgaa
gacgtcgcgatcatgatggtcgaggccggcggcggcaagaaccagtgggagctcattcag
gctggcgccactgcccccaccgaagacgtcgtggccgacggcctcgaggccgccaagccc
ttcatcaaggtcctgtgcgaggcccagctcaaggtggccgagaaggcctccaaggagacc
gttgagttcccgctgttcctggactacaccgacgaagagtacgcggcggtcgaggaatac
gcggccgagaaggtcgcccaggccctgctgactgagggcaagctcgcccgcgacgaggcc
gttgacgccgtcaaggaagagatgcttgaggccctggccgagcgcttccccgagtcggag
aaggccctcaaggctgccttccgctcgctcgagaaggccacgatccgtaaccgcaccctg
cgcgaagagatccgcatggacggccgtaccccgcgccagatccgttctctgtccgccgag
gtcgaggtcctgccccgcgtgcacggttccgccctgttccagcgtggcgagacccagatc
ctgggcatcaccactctggccatgctgcgcatggagcagcagatcgacaacctgtcgcct
gtcaacgctaagcgttacatgcaccagtacaacttcgctccgttctcgacgggcgaggtc
ggccgcgtcggctccccgaagcgccgcgagatcggccatggtgacctggccgagcgcgcc
ctggttcccgtcctgccctcgcgtgaggacttcccctacgcgatccgtcaggtctccgag
accatgggctccaacggctcctcgtcgatgggctccgtctgcgcctcgaccctgtccctc
ctccaggccggcgtgccgctgcgcgcccccgtcgcgggcatcgcgatgggcctcatgacc
ggtgaggtcgatggccagttcaaggccgtcaccctgaccgacatcctgggcgccgaggac
ggcttcggcgacatggacttcaaggttgccggtacccgtgacttcatcacggctctgcag
ctggacaccaagctcgacggcatcgactcccaggtgctgcgcgccgcgctggcccaggcc
cgcgacgcccgactggcgatcctcgacctgatcaaccaggcgatcgacggcccggatgag
atgagccccaacgctcctcgcatcatcaccgtcaaggtccccgtcgacaagatcggcgag
gtcatcggccccaagggcaagatgatcaaccagatccaggacgagaccggcgctgacgtc
accatcgaggacgacggcaccgtctacatcgcctcctccgacggcgcctccgccgaggcc
gcccgcacgatggtcaaccagatcgcgaacccgcagatgcccgaggtcggcgagcgcttc
gtcggcacggtcgtcaagaccacctcgttcggcgccttcgtgtcgctgacccccggcaag
gatggcctcctgcacatctcgcaggtccgtcgcctcgtgggcggcaagcgcatcgactcc
gtggacgacgtcctgcaggtcggccagcaggtcgaggtcgagatcgctgagatcggcgac
cgcggcaagctgagcctgcacgccgtcatcgacggcgaggctggcgagctcgaggccgcc
gagggcgagcagaccgagcagcgtcgcgagcgccgcgaccgctccgagcgtcgcgagcgt
cgcccccgtacccgcacccgtcgtcgccgtgacgacgagcgcgaggacggcgcttccgag
gagtga
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