Streptomyces paludis: DVK44_25845
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Entry
DVK44_25845 CDS
T06964
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spad
Streptomyces paludis
Pathway
spad03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DVK44_25845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spad03400
]
DVK44_25845
Enzymes [BR:
spad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DVK44_25845
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DVK44_25845
DNA repair and recombination proteins [BR:
spad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DVK44_25845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
DZR
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AXG80530
UniProt:
A0A345HV06
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All DBs
Position
5836559..5837443
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AA seq
294 aa
AA seq
DB search
MPELPEVEVVRRGLERWVAGRTVAGTEVLHPRAVRRHPAGGEDFAARLQGRTVVAARRRG
KYLWLPLGSEGESDPAGADASILGHLGMSGQLLVQPESAPDEKHLRIRIRFTDSLATELR
FVDQRTFGGLSLHDNTPDGLPDVIAHIARDPLDPAFDDGAFLAALKLRRTTIKRALLDQS
LISGVGNIYADEALWRAKLHYERPTATLPRPRAAELLGHVRDVMNAALDAGGTSFDSLYV
NVNGQSGYFDRSLDAYGREDEACHRCGTPIRRRPWMNRSSYFCPRCQRAPRTAS
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgcccgaggtcgaagtcgtccggcgcggactggagcgctgggtcgccggc
cgtaccgtcgccgggaccgaggtgctgcatccgcgcgcggtacgccgccaccccgccggg
ggcgaggacttcgcggcccggctccaggggcggaccgtcgtcgccgcccgtcggcgcggc
aaatatctgtggctgccgctcggctccgagggggagagcgacccggccggcgcggacgcc
tcgatcctcggccatctcgggatgagcggtcagctcctggtccagccggagtccgcgccc
gacgagaagcatctgcgcatccggatccgcttcaccgacagcctcgccaccgagctgcgc
tttgtcgaccagcgcaccttcggcggactctcgctccacgacaacacccccgacggactg
ccggacgtcatcgcgcatatcgcccgcgacccgctggaccccgcgttcgacgacggtgcc
ttcctcgccgcgctgaagctccgccgtacgacgatcaaacgcgctctgctcgaccagtcc
ctgatcagcggcgtgggaaacatctacgcggacgaggcgctctggcgcgcgaaactccac
tacgaacgcccgacggcgacgctgccccggccgcgcgcggccgaactgctcgggcatgtc
cgggacgtgatgaacgcggcgctcgacgcgggcggcaccagcttcgacagtctgtacgtc
aatgtgaacggtcagtcggggtacttcgaccggtcgctcgacgcgtacggacgcgaggac
gaggcgtgccaccgctgcggaacgccgatccggcggcggccgtggatgaaccggtccagc
tacttctgcccgcgctgtcagcgggcgccgcgcaccgcgtcgtaa
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