Streptococcus pantholopis: A0O21_06535
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Entry
A0O21_06535 CDS
T05054
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spat
Streptococcus pantholopis
Pathway
spat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0O21_06535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spat03019
]
A0O21_06535
03009 Ribosome biogenesis [BR:
spat03009
]
A0O21_06535
Enzymes [BR:
spat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A0O21_06535
Messenger RNA biogenesis [BR:
spat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0O21_06535
Ribosome biogenesis [BR:
spat03009
]
Prokaryotic type
rRNA helicases
A0O21_06535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Arginosuc_synth
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AND79705
UniProt:
A0A172Q8I4
LinkDB
All DBs
Position
complement(1421051..1422598)
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AA seq
515 aa
AA seq
DB search
MKFTELKLSKNLLSAVEKAGFTQPSPIQELTIPLALDGRDVIGQAQTGTGKTAAFGLPAL
DKIDTDRNVIQVLVVAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGA
HVVVGTPGRLLDLIKRRALKLSHVETLILDEADEMLNMGFLEDIEAIISYVPKERQTLLF
SATMPEAIKAIGLKFMKDPEHVKVAAKELTTDLVDQYYVRVKESEKFDIMTQLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDGLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKFGQSITFVAPNEMGYLSIIEQLTKK
RMKGLKPPTAVEAFQAKKKVALQRIERDFADEAVRGRFEKFKGDALKLAAEFTPEELALY
ILSITVQDPEALPKVEIAREKPLPFKPSSKVSNDRGRNRDRNRSRYDRRRRDSRYDFKRG
PRRSKNDFQNKDNKRPHRTSSEKKSGFVIRNKGER
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaactaaaattatcaaaaaatctgctgtcggcagtagaaaaggctgga
ttcacccaaccttcgcctattcaagagctaaccattcctctagctttagacggcagggat
gtgatagggcaggcgcagacaggaacagggaaaacggcggcttttggtcttccggctctc
gataaaatcgatacagacagaaatgtgattcaagtccttgtggttgctccgacacgtgaa
ctggctgtgcagagtcaggaggaactttttcgttttggccgtgaaaaaggggttaaggtt
cgctctgtttatggcggctcaagcattgaaaaacagattaaggcactcaagtcgggagct
catgttgttgtcggcactcccggacgccttcttgatttaataaaacgcagggctctgaaa
ctgtctcatgttgaaactttgattttggatgaagcagatgagatgctgaatatgggcttt
ttggaagatattgaagctatcatcagctatgttcctaaagagcggcagaccctgcttttt
tcagcaacaatgcctgaagctattaaagccatcggccttaaatttatgaaagatcccgag
catgttaaagtggctgccaaagaactgactactgatttggttgaccaatattatgttcgg
gtaaaagaaagtgaaaagtttgacatcatgacccaactcatggatgttgaccagccggaa
ctgtccattgtttttggccggactaaacgccgtgttgacgagctgacccgaggtcttaaa
ctgcgaggttttcgggcagaaggaattcatggcgatcttgatcaaggcaagagactgcgt
gttctgcgtgattttaaaaatgacggccttgatattttagttgcgactgatgtggctgcg
cgtggattagatatttcaggggttacccatgtctataactatgacattccgcaggatccg
gaaagttatgtccaccgtatcggccggaccggccgtgccggcaaatttggccagtctatt
acgtttgttgcgccaaatgaaatgggctatctttcaatcattgaacagttgacgaaaaaa
cgcatgaaaggccttaaaccgccgactgctgtggaagcttttcaggctaagaaaaaagtt
gctctgcaaaggattgagcgtgattttgcagatgaagcagtccgcggccgttttgaaaaa
tttaagggggatgctcttaagttagcggctgaatttacgcctgaagagctggctctctat
atcctgagtattactgtccaagatccggaagctctgcctaaggttgaaattgccagagaa
aaaccccttccctttaagccatccagcaaggtttccaatgacagaggccggaatcgcgac
agaaaccgcagccgttatgaccgccgtcgccgagacagccgctacgacttcaagaggggg
ccccgcagaagtaaaaatgatttccaaaataaagataacaagcgccctcatcgcacttcc
agcgaaaaaaagagcggttttgttatccgtaataaaggggaaagatag
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