Sphingomonas paucimobilis: DRN02_001025
Help
Entry
DRN02_001025 CDS
T06034
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03410
Base excision repair
spau03430
Mismatch repair
spau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DRN02_001025 (recJ)
03430 Mismatch repair
DRN02_001025 (recJ)
03440 Homologous recombination
DRN02_001025 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spau03400
]
DRN02_001025 (recJ)
DNA repair and recombination proteins [BR:
spau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DRN02_001025 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DRN02_001025 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DRN02_001025 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QBE90785
LinkDB
All DBs
Position
complement(241724..243478)
Genome browser
AA seq
584 aa
AA seq
DB search
MTDVLGIAQSILGQPWRWRALSADARDGLVHDDLVTQLLLARGCPPEAVEDHKQPSIRSF
MPDPSIFRDMDRAADRLADAVIAGEPVAIFGDYDVDGATSSALMVRLLRSLGLSPRAYIP
DRLAEGYGPTEAALLRLQAEGANLIVTVDCGAQAFEPLAAAHAAGIEVMVVDHHKCATLL
PLAHAVVNPNRLDEDEGAAHGHLAAVGVCFLLGAALIRTLRQRGFFADRPEPRLLDLLDL
VALGTVADVAPLRGLNRAFVAQGLKVMAQRRNIGLASLTEAARLTRAPTCSDLGFALGPR
INAGGRVGRADLGVRLLTTEDPAEARAIAEELNHFNDERRAIEAGVQATAETIVDRGRQV
ALVSGTGWHPGVIGIVAGRLKEKLDRPAIVIAIDENGIGKGSGRSITGVDLGAAILAAKE
HGLLIAGGGHAMAAGLTVAANRISELADFLEDRLAQAVTRASAGRALLVDAVLAPGGVNP
ALVGSMEAGGPYGMGWPAPRIAAGPFRVIRADLVGTNHVRAIIAGADGRSLKAMAFRHAE
TPLGQALLGAGSTRRLWLAGRAKVDDWSGRDVAELHIEDAAWAD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtcctcggcatcgcgcaatccattcttggccagccctggcgctggcgagcc
ctgtccgcagacgcccgcgacgggctggtccatgacgatctggtgacccagttgctgctg
gcgcgcggctgtccgcccgaagcagtcgaggaccataaacaaccctcgatccgcagcttc
atgcccgatccctcgatctttcgtgacatggaccgcgccgccgaccgcctcgccgatgcg
gtgatcgcgggtgagccggtggcgatcttcggcgattacgacgtcgacggagccacctcc
tcagcgctcatggtccggctgctgcggtcgctgggcctatcgccgcgcgcatacatccca
gaccgcctggcggagggctatggcccgaccgaggccgccctgcttcgcttgcaggcggag
ggtgcgaacctgatcgtcaccgtcgattgcggcgcccaggcgttcgaaccactcgccgcc
gcgcacgccgcagggatcgaagtgatggtcgtcgatcatcacaaatgcgccaccctgctc
cccctcgcccatgcggtggtgaaccccaaccgcctggacgaggatgagggtgcggcgcat
ggccatctcgccgccgtgggcgtatgtttcctgctgggagccgcgctcatccgcacctta
cgccagcgcggtttcttcgccgaccggcccgaaccacgcctgctcgacctgctcgacctc
gtcgcgctgggtacggtcgccgacgtcgcgcccctacgcggcctcaaccgcgccttcgtg
gcgcagggactgaaggtcatggcccagcgccgcaatatcgggctcgcctcgctgaccgaa
gccgcccgactaacccgcgcgccgacctgttcggacctgggcttcgccctcggcccgcgc
atcaatgcgggcgggcgggtcggccgcgccgatctcggcgtccggctgctgaccaccgag
gacccggccgaagcgcgtgcgatcgccgaggaactcaatcatttcaacgacgaacgccgc
gcgatcgaagctggtgtgcaggcaaccgccgagacgatcgtcgatcgtggccggcaagtg
gcgctagtctccggcacgggctggcatcccggcgtcatcggcatcgtcgcgggacggctg
aaggaaaaactcgaccgccccgccatcgtcatcgccattgacgagaacggcatcggcaag
ggctccggccgctcgattaccggggtcgacctgggcgcggcgatcttggcggccaaggag
catgggttgctgatcgcgggcggtggccatgccatggcggccggtctgacggtagcggcc
aatcgcatttccgaactggccgatttcctggaggatcggctggcgcaagccgtcacgcgc
gccagtgccggccgagcattgctggtcgatgccgtactcgcccccggcggggtcaatccc
gcgctggtcggcagcatggaggcgggtggcccctatggcatgggctggcccgccccgcgc
atcgccgccggccccttccgcgtcatccgcgccgatctggtcggcaccaaccatgtccgt
gccatcatcgccggcgccgatggccgcagcctgaaggccatggccttccgccacgccgaa
accccgctcggccaggctctgctcggcgccggcagcacgcgccgcctgtggctggccggc
cgcgccaaggtggacgactggtccggccgcgacgtcgccgaactccatatcgaggacgcg
gcatgggccgactaa
DBGET
integrated database retrieval system
