Solanum pennellii: 107004072
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Entry
107004072 CDS
T04130
Name
(RefSeq) chromatin structure-remodeling complex protein SYD isoform X1
Organism
spen
Solanum pennellii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
ResIII
DEAD
DEAD_2
Motif
Other DBs
NCBI-GeneID:
107004072
NCBI-ProteinID:
XP_015057784
LinkDB
All DBs
Position
11:58465478..58497016
Genome browser
AA seq
3279 aa
AA seq
DB search
MTNPNNVELEAAKFLHKLIQESKDEPTKLATKLYVILQHMRSSGKESSMPYQVISRAMET
VVKQHGLDIEALMSSRLPVSAAAQAGEAASSQVAGSSQRPGVTRDSKANFLGNEMGSGPS
GSGHGVYQASAPHISGTGVKVPVMASPAANSSQPVEAGISSPMQFGSPSIDNHGYAAKLH
KDGSTEPFSGPTSADLVAGRTAAGRAIEHEGGSNMLGNAGKISQGGMPNNVPEKSILRSE
TIRDAGMLSVAAQAPVSTMPFKEHHLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNFYPK
EDRRELVDHKGREQLVTDQGSASEVTRTFGGAGETDRISSGPTPSGILTDTNSSMEAENA
NLMEDKNGQLDPSEHADERRPQRKMRMIQDAEMPIQDAIESQASALRGVPTDPKSFPPYN
HENAPANTEQLGMFPQASSVMGTSKQMKPDLSGRSGTEASKVSPTASANTHGSGLLMRDN
HTGQSQNLVDSNAQGNRHADSNLPSLPLRQQWKSVPGVINQSPTMMQVKDSNITLKNLSQ
VQETDQEDDNISASTDRLSSPRHTMLEKWILDQRKRKLISEQKWSKKQQKTEERIAASAE
KLKESVSSSEDISAKTKSVIELKKLQLLELQRRLRSEILYDFFKPVATDMERLKSIKKHR
IGRKSKQFERYEQRMKEERQKRFRERQKEFFSEIEVHRERLEDVFKMKRERWKGFNKYAK
EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLG
SKLKEAKSIARKFETDMGDNRNSGVVEEDEIDFGDEDETDQAKHYLESNEKYYLMAHSVK
ETITEQPSSLKGGKLRGYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLMCYLMET
KNDRGPFLVVVPSSVLPGWESEINFWAPDMLKIVYSGPPEERRKLFKERIVHQKFNVLLT
TYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYRSNHRLLLTGTPLQNN
LEELWALLNFLLPNIFNSSEDFSQWFNKPFESGDSSPDEALLSEEENLLIINRLHQVLRP
FVLRRLKHKVENELPSKIERLVRCEASSYQKLLMKRVEDNLGAFGTSKARSVHNSVMELR
NICNHPYLSQLHVEEVHELVPKHYLPTFVRICGKLEMLDRLLPKLKATDHRVLLFSTMTR
LLDVMEDYLCWKQYKYLRLDGHTCGGDRGALIDKFNQPNSPFFIFLLSIRAGGVGVNLQA
ADTVIIFDTDWNPQVDLQAQARAHRIGQKKDVLVLRLETVQTVEEQVRAAAEHKLGVANQ
SITAGFFDNNTSAEDRREYLESLLRESKKEEAAPVLDDDSLNDLIARSEPEIDIFESVDR
RRREEEMEIWKKLCLESGTQSSELIPPLPSRLLTDDDLKPFYEAMKISDKPVVAPSPGLK
RKGQSLGGLDIQHYGRGKRAREVRSYEEQWTEEEFEKMCLAESPQSPSLKEEIQEKNSPS
VSGNCPDPVVANSELQTRAQYQPPLQHPVQELPQQHIGPIIQQSPVTVTPPSKRGRGRPR
RTAIVAEISPSPVIISAIAASVNVDSNTIAENTSTSQATSGPVSVSFPCASSIESTSATI
LQNVTGVAPSHQSIAPSLAVVSQSGPPCPPTSGQGRGRGRGRGRGRGRKPQTGGEAPGRR
GKQQNVTAEAFPAPPTQAVSEPVAAAQGVSVMSSTHHMPATPPAVGEPDVPQVVAGLGSK
NLGHAPVSMRDASKELNSVVPLATSSSSKDLTPVSTVSVVPSSAASQDPSSISPPGVLQS
SSRNHSDHLSLSAAQTEATLQVNPISVVPHSSPSAGKETSSVSPVPLHSLTSKDSDSVLP
SLVPESSSARVELSSDFPLPAVAPSSSIGHDSLCDSSNLKSTCQQESGAITAHTSDPVPP
LPVISSVSQYSTPPTALKPGRGRGRKAQTGSEAPRRRGKRQDLVTAAVTEGLSVQDPKLI
EPPQKRTRLSVGRKPTTRSKRENESQVVDQSVASQKTPDFADGEIPKNMVSSEVNPHNSA
INRDESQSHAIPVPTQMNDNLNGDVATAEEDLDDAQQKENVVQSVTSQSCSSPHVEPQIN
TVNTDNSPSQEQTAIVQSDASQKIPYPGTGQIPQAMACSEVELHRDAIKSDISQSSGDVA
SCEVAATKEVLSEDQQTMKVQSAASQTPSVHSVGKIPEDIGCEVATTKEVLTEDQQTMEV
RSPASQTRSVHSVGKMPEDIVSNEVLPQCDAIQTDASQSHVTLASSGSMAPVIDCPVEKS
ESDSKGDDGEKTETNSIDGSNMEVPVGALELTSSDDLNKSGDAEGKTSSSLSGVLPTSSE
LVPRPSANTEVYLGSVGSGKVSFNSGSTQSLSECVSAKTDVEQLKTEDCSLDKSFVSKAE
AGSTEHLAGGILGKEQETGVTMEETVVSPAVETDNLNMKGITSFASSSTVAESLVDEPPV
CGSYEQGEDKLEKAAEGTHSDKGAMAEVSEQDKLSVNVSLGTTKGLSRVEKEKYRIPETF
EKQVNVAESLTEECGKDLAAHGPEMKDSDVSEVAPSPRNESQSSFTVETSQRTFEEQVNV
DESLTGECGGDLAADSPEIKDSDVSEVAPSPRNESQSSFTVGTSQSEPELQAIAEANLHP
SISETSPSTESGAQKESLSPRLASNAETVEALTETFASRHDTNYVAELQGNLSFDVKDDI
SNSEVDVSQLCPADGSSENHPELEQVVVEDVRTDICEESASDEVDDIVLRQTENADGQCH
DGLSVETHESKRAEDKVDVLNGELNKHLSSTIAGTSKKVADLELVAEENTGKINDGSVDT
GQVADKSEDMAVRDLTVEGQESKETDAAGDTSTSKNEVESQSAVVENIGSKSVASGEVTA
AELLIEGSEHLHVLDHAIEVQGNKAFDATRDASESNSELNETQPGGTYQIVSELQFVAEQ
DSETMNKKNTLPDATAVEPQPAVSENLSFRNPAHQGPKNQTSDSTEDFSTSNNELNESQP
KAADGTSEIAAESHLVSKQNIEIHVEVATGDVIADNAAVVKSENFPSIDVAVEEKGKKES
DVTCDISDSELKEPKTSQTTTEVNTRTICEESGMTDKDVTAEKAAVGKSENFPSIDVAVE
EKGKKESDVSDEISDSELKEPKTRQSAIEVKTPIVCEELGMTDKEVAPLEVETPFRDLSG
SSGRDLAVEEQEKEKSAASKNVSSPENEEHKCIPGARAADNGAESQLVAERDSETVLNKE
VFSGKEEISSIKLAGDEDVPTAIEYGDQELSSATGAGDD
NT seq
9840 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatccaaataatgttgagctggaggcagcaaagtttctccataagcttattcaa
gaatctaaggatgagccgactaaattggctacaaagctttatgtgattttacaacatatg
agatccagcgggaaggagagctcaatgccttatcaagtaatatcaagggctatggagact
gtcgtcaagcaacatggtcttgatattgaagctttaatgtcctcacgtcttcctgtgtct
gctgcagcacaagcaggagaagctgcatcatcacaagtagctggatcttcacagaggcca
ggggttactagagactccaaagcaaattttctgggaaatgagatgggtagcggtccaagc
ggcagcggacatggtgtttatcaagcatctgcaccccacataagtggtacaggtgtcaaa
gttcctgtaatggcgtctcctgctgcaaattcatctcagccagtagaggcaggaatttca
agtccaatgcagtttggaagtccttcaattgataatcatggttatgctgcaaaattgcac
aaagatggaagcacagaacctttctctggtcccacctcggctgatcttgttgctggcaga
actgcagcgggaagagcaatagagcatgaaggaggatctaatatgttaggaaatgctggc
aagatcagtcaggggggcatgcccaacaatgtcccagagaagagtatacttagaagtgaa
acaatcagagatgcagggatgttgtctgtcgctgctcaggctcctgtatctaccatgcct
ttcaaagaacatcatttgaagcagcttagagcacaatgtcttgtgtttttggcttttagg
aatggtttaatgccaaagaagcttcatcttgagattgcactcggaaacttctatccgaaa
gaagatcgcagagaattggttgaccataaaggaagggagcaactggttactgaccaaggc
agtgcatctgaagtcacacggacatttggaggagctggcgaaactgacaggatttcttct
ggtcctacaccttctggaattcttaccgatacaaattcatcaatggaggctgagaatgca
aacttgatggaagataaaaatggtcagcttgatccttctgagcatgctgacgaaaggaga
cctcaaagaaaaatgagaatgattcaggatgctgaaatgcccatccaggatgctatagaa
tcacaggcatctgcacttagaggagttccgactgatccgaaatcctttcctccctataat
catgagaatgctcctgcaaatactgaacagcttggaatgtttcctcaagcttcctctgtt
atgggcacaagcaagcaaatgaagcctgatctgagtggtaggagtggaactgaggcttca
aaggtatcaccaactgcctctgccaatacccatggatcgggtctgctaatgagagataat
catactggtcagtctcaaaatcttgttgatagcaatgctcaaggaaatcgacatgctgat
agtaacttacctagtttacccttgaggcaacagtggaaatctgttcctggagtaattaat
cagagtcctacaatgatgcaagtgaaggattcaaatataacgctgaaaaatctgtcacaa
gtgcaagaaacagatcaagaggatgataatatttcagcatccacggataggttatcatct
ccaaggcatacaatgctggagaaatggattctggatcaacggaaaaggaagcttattagt
gaacagaaatggtcgaaaaaacagcaaaaaacagaagaaagaattgctgcttctgctgag
aagttgaaggaatctgtgagctcctctgaggatatctctgcaaaaacgaaaagtgtcatt
gagctgaaaaagcttcaattgctggaactgcagcgtcgcttacggagtgaaattctctat
gattttttcaagccagtagcaactgatatggagcgtttaaaatcaatcaagaagcacaga
attgggaggaaatcaaagcaatttgaaagatatgaacaaagaatgaaggaggaacgtcaa
aagagatttcgtgagagacagaaggagtttttcagtgagattgaagttcatagggaaaga
ttggaagatgtattcaaaatgaagagagaacgctggaaaggtttcaataagtatgcgaag
gagttccataaaaggaaggaacggatacatcgtgagaagattgacaggatccaacgtgag
aagattaatttactgaaaatcaatgatgttgagggataccttcgaatggttcaggatgca
aagtcggatcgtgttaacaaactactaaaagagacggaaaagtacctccaaaagcttgga
tccaaattaaaggaggccaaatcaattgcaagaaaattcgagactgacatgggtgacaat
agaaactcaggtgtggttgaggaggatgaaattgactttggtgatgaggatgaaacagac
caggctaagcattacttggaaagcaatgaaaaatactatttgatggcacatagtgtaaag
gaaaccatcacagagcagcctagttctctcaaaggtggaaaattacggggttaccaaatg
aatggattgcgatggttggtttcactctacaataaccatttgaatggaattttagctgat
gaaatgggcctcggtaaaactgttcaggttatatcccttatgtgttacctgatggaaacc
aaaaatgacagaggaccttttctggtggtagtgccatcctctgtcctacccggatgggag
tcagagataaacttttgggcaccagatatgctcaagatagtttattctggaccaccggaa
gagcggaggaagcttttcaaggaaagaattgttcatcaaaagttcaatgttcttttgacg
acatatgagtatttaatgaacaaacatgatagaccaaaactaagtaaagtacattggcac
tatatcataattgatgaagggcatcgcataaaaaatgcttcttgcaagttgaatgctgat
ctgaagcactaccgcagtaatcataggttactgttgacgggcactcctcttcagaacaat
cttgaggagctctgggcactacttaacttccttttgccaaatatcttcaattcatcagaa
gacttctcacaatggtttaacaagccatttgagagcggtgatagctcacctgatgaagct
ttgctctcagaggaggaaaatcttttgatcattaaccgtctgcaccaagttttgcgtcca
tttgttcttaggagattgaaacacaaggttgagaatgaattgccttcaaagattgaaaga
ctggttagatgtgaagcttcttcgtatcagaagcttttgatgaagcgagtggaagacaac
cttggtgcattcggaacttcaaaggctcggtcagtccacaattctgttatggagctgcgc
aacatttgcaatcatccatatcttagccagcttcatgtggaggaggttcatgagctagtt
cctaagcattatctgccaacgtttgtgaggatttgtgggaagcttgagatgttggacaga
ttactgcctaaacttaaggcaacagatcaccgggtcttgcttttctcaacaatgaccagg
ctgcttgatgtaatggaagattatctctgctggaagcaatataagtaccttcgcttggat
ggacatacttgtgggggtgacagaggtgcccttattgataaattcaatcagcctaattct
cccttctttatatttctgttgagtattcgtgctggaggtgttggagtaaatcttcaagct
gctgatacagttataatttttgacacagattggaatcctcaggttgatcttcaagcacaa
gcaagggctcataggataggtcaaaagaaggatgttcttgttcttcgattagaaacggtc
caaactgttgaggaacaagttagagctgctgctgagcataaactgggagttgctaaccaa
agcattactgctgggttctttgataataacacaagtgcggaagaccgaagggagtacttg
gagtccctcttgcgagaaagtaaaaaagaggaagctgcacctgttcttgatgacgattcc
ttgaatgatcttatagcacgaagtgagccagagattgatatatttgagtcagttgacagg
agaaggcgtgaagaagagatggaaatctggaagaagttatgcttagaaagtggaacacaa
agttcagaactcattcctcctttgccctctcgacttcttactgatgatgacttgaaacca
ttctatgaagcaatgaaaatatctgataagccagttgtggctcctagccctgggttaaaa
aggaagggtcagagtcttgggggtcttgatatccaacactatggacgtgggaaaagagca
agagaggttcgttcatatgaagagcaatggacggaagaggaatttgagaaaatgtgcctt
gctgagtctcctcaatcacctagtctaaaggaagaaattcaagaaaagaattccccttca
gtctctggcaactgtcctgaccctgttgttgccaatagtgaattacaaacccgagcacag
tatcagcctcctctccagcaccctgtgcaagaacttccccaacaacatattggacccata
attcaacaaagccccgtgactgtgactccgccatctaaacggggccggggaagaccaagg
aggacagcaatagttgctgaaatttcaccgtccccggtcattatttcagcaattgcagct
agtgtaaacgtggatagcaataccattgcagaaaatacttctaccagtcaggcaacttct
gggcctgtttcagtgtcttttccttgtgcttcttccatagaaagtaccagcgcaaccatc
ctacagaatgtaactggtgttgcgcccagccatcagtcaattgcaccttctcttgctgtt
gtttctcagtctggtcctccttgccctcctacaagtggacagggaaggggccgaggtaga
ggccgaggtcgaggtcgaggtcgaaagcctcaaactggaggagaagctccagggcgtaga
ggaaaacaacagaatgttacagcggaggctttccccgcccctccaactcaagcagtaagt
gagcccgtcgctgcagcgcaaggtgtgagtgttatgagttctactcaccatatgcccgca
acacctcctgcagtgggtgagcctgatgtgccccaggtggtggcaggtttgggttcaaaa
aaccttggtcatgctcctgtttccatgagagatgctagtaaggaactgaattcggttgtg
cctcttgcaacatcttcctctagcaaagacttaacccctgtttcgactgtttctgttgtt
ccatcgtctgctgccagtcaggaccctagttcaatttcacctccaggtgtccttcaatca
tcctcgagaaaccattcagaccatctttccctctctgctgcccagaccgaagctactctg
caggtgaatccaatttcagtagttcctcatagttcaccttcagctggcaaggaaacgagt
tccgtgtcacctgttcctcttcattcattaacttcaaaggactccgattcagttttacct
tctcttgttcccgaatcatcatctgctcgcgtggaactaagttcagatttccctcttcct
gctgttgcaccctcttccagcataggtcatgattcattatgtgattcttctaacttgaag
agcacttgtcaacaagaatctggtgcgataactgctcatacttctgatccagttccacca
ttgcctgtgatttcgtcagtttcacagtatagtactcctcccactgcacttaagccaggt
agaggacggggacgcaaggctcaaactggaagtgaggcaccacggcgcagggggaagaga
caggatttggtcactgcagctgttactgaagggttaagtgttcaggatccaaaattaatt
gaacccccacaaaagagaaccaggttatccgtagggaggaagcccactacaagaagcaag
cgtgagaatgaatctcaagtagtagaccaatcggttgcatctcaaaagactccagatttt
gctgatggagaaatccctaagaatatggtttctagtgaagttaatccacataacagtgca
atcaacagagatgaatctcaatcccatgctattccggttcctactcaaatgaatgataat
ctaaatggtgacgttgctactgctgaagaggatctcgatgatgctcagcaaaaggagaat
gtggtccaatctgttacatctcaaagttgctctagtcctcatgttgagccacagattaac
acggtcaacactgataattctccttcccaggaacaaacagctattgtccagtcagatgct
tcacaaaagattccatatcctggcacaggacaaatccctcaagcgatggcgtgttctgaa
gttgagctacatcgcgatgctatcaaatccgacatatcacaatccagtggcgatgttgct
agttgtgaagttgccgcaacaaaggaagttcttagtgaggatcaacaaacaatgaaggtt
cagtcagctgcatctcagacgccttcagttcactctgttgggaaaattcctgaagatatt
ggttgtgaggttgccacgacaaaggaagttctcactgaggatcaacaaacaatggaagtt
cggtcgcctgcatctcagacacgttcagttcactctgttgggaagatgcctgaagatata
gtgagtaatgaagttctgccacagtgtgatgctatacaaacagatgcatctcaatcccat
gtcactcttgcctcttcaggatcaatggctccggttattgattgcccggttgaaaagagt
gaaagtgattctaagggtgatgatggtgaaaagactgagactaattctatagatgggtca
aacatggaagtccccgttggagctttggagcttacatcatctgatgatctgaacaagagt
ggagatgcagaagggaaaactagcagcagtttaagtggggtccttcccacaagttctgag
ttagttccccgtccaagcgcaaatacagaggtatatctgggttccgtaggctccgggaaa
gtaagctttaattcaggttcaactcaaagcctgtctgagtgtgtgtccgcaaaaactgat
gttgaacagttaaagactgaggattgttctctggataaatcatttgtttctaaagctgag
gcaggcagcactgagcatctcgctggtggcatacttggaaaagaacaggaaaccggagtc
accatggaggagactgttgtttcacctgctgtggagactgacaatctgaacatgaaggga
atcacatcatttgcttcttcatctactgtggcagaatctttagtggatgaacctccagta
tgtggatcttatgaacaaggtgaggacaaacttgaaaaagcagcagaaggaacacattcc
gataaaggtgcaatggccgaggtttctgaacaagataagttatcagttaacgtgtcattg
gggactactaaaggcttaagtagggtggagaaagaaaagtataggattccagaaactttt
gagaagcaagttaatgttgctgaatccctaacagaagaatgtggaaaagatcttgcagca
catggtccagaaatgaaagattctgatgtaagtgaggttgcgccaagccctagaaatgag
tcccaatccagtttcactgttgaaacatctcaaagaacttttgaggagcaagttaatgtt
gatgaatccctaacaggagaatgtggaggtgatcttgcagcagacagtcccgaaataaaa
gattctgatgtaagtgaggttgcgccaagccctagaaacgagtcccaatccagtttcact
gttggaacatctcaaagtgaacctgaactacaagcaattgctgaagcaaacttgcatccc
agcatttccgagacttctcccagcacagaatctggtgcccagaaggaatccctttcacct
aggcttgcttcaaatgctgaaactgttgaggctctaacagaaacgtttgccagccgtcat
gacacgaattacgtagctgaattacagggtaacttgagttttgatgtaaaggatgatatt
tctaattctgaagttgatgtatctcaactctgtccagctgatggatcatctgagaatcac
ccagaattagaacaggttgtggtggaagatgtgagaactgacatttgtgaggagtctgcc
tcagatgaagttgatgatattgtactgcgacaaacagagaatgctgacggtcagtgtcac
gatggtttgtctgttgagactcatgagagcaaaagagctgaagataaggttgacgtttta
aatggtgaactaaataaacatctatccagcacaattgctggaacatccaaaaaggtggca
gatctggagttagttgccgaagagaacacagggaagataaatgatggctcagtagataca
ggtcaggtggcagataagtccgaggatatggcagtccgagatcttactgtggaaggacaa
gagagtaaggaaactgatgccgcaggagatacttcaacatcaaaaaatgaggtggaatca
caatctgctgttgtagaaaatataggaagcaagtcagtagcatcaggggaggtaacagct
gctgaacttctgatagaagggtctgagcatttgcatgtcctagaccatgcaattgaagta
caaggtaacaaagcatttgatgccactagagatgcttcagaatcaaattctgagctaaat
gaaactcaacctggcggaacatatcaaattgtgtcagagttacagtttgttgcggagcaa
gactctgagacaatgaacaagaagaatactttgcctgatgctacagctgttgagccccaa
ccagctgtctctgagaatttgagttttcgaaatcctgcacatcaaggaccaaagaaccaa
acatctgattcaactgaagatttttcaacttcaaataatgaacttaatgaatctcaaccg
aaagctgcagatggaacttctgaaatagcagcggagtctcatttggtttccaaacaaaac
atagaaattcatgtggaggttgctacaggggatgttatagctgataatgctgctgtagtg
aagtctgaaaattttccatcgatagatgttgctgttgaagaaaaagggaagaaagaatct
gatgtaacatgtgacatttctgattctgaactcaaagaacctaaaaccagtcaaaccaca
actgaagtgaacacacgtacgatatgtgaggagtcaggaatgaccgacaaggatgttaca
gccgagaaagctgcagtaggtaagtctgaaaattttccatcgatagatgtggctgttgaa
gaaaaagggaagaaagaatctgatgtatcagatgaaatttctgattctgaactcaaagaa
cctaaaaccagacaatccgcaattgaagtgaaaacacccatagtatgtgaggagttggga
atgactgacaaggaggtagctccacttgaagttgaaactccattcagagatttgtctggt
tcttctggcagagacttggcagttgaagaacaagaaaaagagaagtctgctgcaagtaaa
aatgtttctagccccgagaatgaagagcataaatgtattccaggtgcaagagctgctgat
aatggggcagaatcacaattggttgctgagagggactctgagacagttctgaacaaggaa
gtattttcaggcaaagaagagatctccagtatcaagctagctggtgatgaagatgtgcca
actgctatagagtatggtgatcaagaactatcgtctgctacaggggctggtgatgattaa
DBGET
integrated database retrieval system
