Solanum pennellii: 107005897
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Entry
107005897 CDS
T04130
Name
(RefSeq) polygalacturonase QRT2-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Module
spen_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107005897
Enzymes [BR:
spen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107005897
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
LPD28
Motif
Other DBs
NCBI-GeneID:
107005897
NCBI-ProteinID:
XP_015060031
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Position
12:complement(2966882..2971688)
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AA seq
416 aa
AA seq
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MCSSISSYTMKTLVLLFILIGLSNSRIYSASIYGYPGSFNVLDYGAAADGITDDSQALLN
TWNDACSSSAGYPQVIIPPNMIFLLSPMTLIGPCNSQNIYFVVSGSLVSPSSPSVWTGQD
SSQWLAFRNVSGLVVGGSGTIDGQGKEWWDQSCRYHPELDGCTRLAPTALKFIFCSQSSI
SNMYFANSAQTHILIERCNGFNVNNVMIQSPGNSPNTDGIHIQASQNVAITNSKISSGDD
CISIGDYSSNVQIYNIQCGPGHGISIGSLGKGGHSAQVSNIHVNNVFFYGTTNGARIKTW
QVGRGFVRDVTFENLQFNSVKNPIIIDQHYCDVRGACKETGTGVQISNVVYQNIYGTSIT
DIAINLNCSMSVPCTDITMQLIQLTPATPGKQVKAYCKNANGQEYGIEPGPCLSGV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcctctatctcttcatatactatgaaaacattggttctcttgttcattttaatt
ggcttgtcaaattcaagaatatatagtgcaagtatatatggatatccaggaagttttaat
gtcctggattatggagctgctgctgatggcattactgatgattctcaagcattacttaat
acatggaatgatgcatgttcatcctcagctggatatcctcaagtgattattcctccaaat
atgatatttttacttagccctatgacactcataggcccctgcaattcacagaacatctat
tttgtggtatccggtagtcttgtttcaccgagctcacctagtgtatggaccgggcaagac
tcgagtcaatggctagctttcagaaacgttagcggtctagttgttggtggctcaggaacc
attgatggtcaaggaaaagaatggtgggatcaatcatgtagataccaccctgaactggat
ggatgcacaagattagctccaactgcgttgaagttcattttttgcagtcagagttcgatc
agtaacatgtactttgcaaacagcgcgcaaactcatatacttatagagagatgcaatggt
ttcaatgtcaacaatgtaatgattcaatctccaggaaatagtccaaatactgatggaatt
cacattcaagcttctcaaaatgtggccattacaaattctaaaattagtagtggagatgat
tgcatttcaattggagattattcttctaatgtccaaatatacaacattcaatgtggacca
ggtcatggtattagtattggaagcttaggaaaaggcggtcattctgctcaagtatcgaac
attcatgtgaacaatgttttcttctatggaactacaaacggagctcgtatcaagacatgg
caggttggcagaggctttgtccgagatgtcacgtttgagaatcttcaattcaactctgtc
aagaaccccatcataattgaccagcattactgtgatgttcgaggggcttgcaaggaaacg
ggaactggagtgcaaatcagcaatgttgtttaccagaacatatacggaacgtcgatcacg
gatatcgcgataaatttaaactgcagcatgtctgtgccatgtacagatataacaatgcag
cttatacaactaacaccagcaacaccaggaaaacaagttaaagcttattgtaagaatgct
aatggacaagaatatggaatcgaacccggtccttgtctctctggagtttga
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