KEGG   Solanum pennellii: 107012220
Entry
107012220         CDS       T04130                                 

Definition
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
spen  Solanum pennellii
Pathway
spen03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    107012220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spen03400]
    107012220
Enzymes [BR:spen01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     107012220
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     107012220
DNA repair and recombination proteins [BR:spen03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     107012220
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH Peptidase_U32_C
Other DBs
NCBI-GeneID: 107012220
NCBI-ProteinID: XP_015067485
LinkDB
Position
3
AA seq 435 aa
MPELPEVEAARRAIEDNCIGKKIVKAIIADDSKVIDGVSPVDFKASLEGKTIVAANRKGK
NMWLVLDSPPFPTFQFGMAGAIYIKGVAVTKYKGSAVKDDDEWPSKYSKVFLELDDGLEL
SFTDKRRFARVRSLENPVSVPPISELGPDALLEPMTVDEFYKALSKKKIGIKALLLDQSF
ISGIGNWIADEVLYQARIHPMQSASSISKEDCATLLKCINEVIKKAVEVEADSSQYPSNW
ISHSREKKPGKAFVDGKKIEFITAGGRTSAFVPELQQNTGAESAKAAGKRQQVKVQKIKH
NDSDSQEEEPEIEETAAGKSKVKQRGANTKRASTNKKSKESNSDDEAPKKSGKAKQNKSS
KGKGGDQKKKTRGTNTAAKRKLEESDDEEDTDDNDASEQDKDQNLSSKTQSKGKKTTKQK
AEPRQTRSKPSKKQK
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgccagagcttccagaggtagaggcagctcgaagagccattgaggacaactgcattggc
aagaaaattgtgaaagctatcatcgccgacgattccaaggtcatcgacggcgtgtctcct
gtggatttcaaagcatctcttgagggcaaaactatcgtagctgctaatcgcaaagggaaa
aatatgtggcttgtgctcgattcccctccttttcctactttccagttcggaatggcgggt
gctatatatatcaagggagttgcagttacaaaatataaagggtctgcggtaaaagacgat
gatgagtggccttccaagtattcaaaggttttccttgagttggatgatggtctggagctt
tcatttacggataagaggcggtttgccagggttcgctcattggagaatccggtgtctgtt
cctccaatatctgagcttggtcctgatgcattgttggagccgatgactgtagacgagttc
tataaagctctgagtaagaagaagattggcattaaagctttattacttgaccagagtttt
atttcaggaattggcaactggattgcagatgaagtgttatatcaggcgagaatccatcct
atgcagtccgcttcaagcatatccaaagaggactgtgcaacattgctgaagtgcattaac
gaggtcatcaaaaaagctgttgaagttgaggcagatagtagtcagtatccttctaattgg
atttcccattcccgggaaaagaaacctggcaaggcctttgttgatgggaagaaaatagaa
ttcatcacggcaggtggcaggacatcagcctttgttccagagctacaacagaatacgggg
gctgaatctgcaaaagcggcaggtaaacggcaacaggtcaaagttcagaaaatcaagcat
aacgatagtgatagtcaagaggaagagccagaaattgaagagacagcagctgggaagtca
aaggtgaagcagcgtggggcaaatactaagagagcttctactaacaagaagtcaaaggaa
agcaacagtgacgatgaagctccaaagaaatctggaaaagcaaaacaaaacaaaagctcc
aagggaaaaggtggtgatcaaaagaagaaaactagaggaacaaatacggctgcaaaaaga
aaactagaggaaagtgatgatgaggaagacaccgacgataatgatgctagtgaacaggac
aaggatcaaaatctttctagtaaaacacaatcaaaggggaagaagaccaccaagcaaaag
gctgaaccaaggcagactaggagtaagccatccaagaagcagaaataa

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