Solanum pennellii: 107012220
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Entry
107012220 CDS
T04130
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spen
Solanum pennellii
Pathway
spen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107012220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107012220
Enzymes [BR:
spen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
107012220
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
107012220
DNA repair and recombination proteins [BR:
spen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
107012220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
107012220
NCBI-ProteinID:
XP_015067485
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All DBs
Position
3:71130807..71135835
Genome browser
AA seq
435 aa
AA seq
DB search
MPELPEVEAARRAIEDNCIGKKIVKAIIADDSKVIDGVSPVDFKASLEGKTIVAANRKGK
NMWLVLDSPPFPTFQFGMAGAIYIKGVAVTKYKGSAVKDDDEWPSKYSKVFLELDDGLEL
SFTDKRRFARVRSLENPVSVPPISELGPDALLEPMTVDEFYKALSKKKIGIKALLLDQSF
ISGIGNWIADEVLYQARIHPMQSASSISKEDCATLLKCINEVIKKAVEVEADSSQYPSNW
ISHSREKKPGKAFVDGKKIEFITAGGRTSAFVPELQQNTGAESAKAAGKRQQVKVQKIKH
NDSDSQEEEPEIEETAAGKSKVKQRGANTKRASTNKKSKESNSDDEAPKKSGKAKQNKSS
KGKGGDQKKKTRGTNTAAKRKLEESDDEEDTDDNDASEQDKDQNLSSKTQSKGKKTTKQK
AEPRQTRSKPSKKQK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcttccagaggtagaggcagctcgaagagccattgaggacaactgcattggc
aagaaaattgtgaaagctatcatcgccgacgattccaaggtcatcgacggcgtgtctcct
gtggatttcaaagcatctcttgagggcaaaactatcgtagctgctaatcgcaaagggaaa
aatatgtggcttgtgctcgattcccctccttttcctactttccagttcggaatggcgggt
gctatatatatcaagggagttgcagttacaaaatataaagggtctgcggtaaaagacgat
gatgagtggccttccaagtattcaaaggttttccttgagttggatgatggtctggagctt
tcatttacggataagaggcggtttgccagggttcgctcattggagaatccggtgtctgtt
cctccaatatctgagcttggtcctgatgcattgttggagccgatgactgtagacgagttc
tataaagctctgagtaagaagaagattggcattaaagctttattacttgaccagagtttt
atttcaggaattggcaactggattgcagatgaagtgttatatcaggcgagaatccatcct
atgcagtccgcttcaagcatatccaaagaggactgtgcaacattgctgaagtgcattaac
gaggtcatcaaaaaagctgttgaagttgaggcagatagtagtcagtatccttctaattgg
atttcccattcccgggaaaagaaacctggcaaggcctttgttgatgggaagaaaatagaa
ttcatcacggcaggtggcaggacatcagcctttgttccagagctacaacagaatacgggg
gctgaatctgcaaaagcggcaggtaaacggcaacaggtcaaagttcagaaaatcaagcat
aacgatagtgatagtcaagaggaagagccagaaattgaagagacagcagctgggaagtca
aaggtgaagcagcgtggggcaaatactaagagagcttctactaacaagaagtcaaaggaa
agcaacagtgacgatgaagctccaaagaaatctggaaaagcaaaacaaaacaaaagctcc
aagggaaaaggtggtgatcaaaagaagaaaactagaggaacaaatacggctgcaaaaaga
aaactagaggaaagtgatgatgaggaagacaccgacgataatgatgctagtgaacaggac
aaggatcaaaatctttctagtaaaacacaatcaaaggggaagaagaccaccaagcaaaag
gctgaaccaaggcagactaggagtaagccatccaagaagcagaaataa
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