Solanum pennellii: 107015682
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Entry
107015682 CDS
T04130
Definition
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
spen
Solanum pennellii
Pathway
spen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107015682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107015682
Enzymes [BR:
spen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
107015682
DNA repair and recombination proteins [BR:
spen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
107015682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
SAP_new25
HeH
Tau95_N
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
107015682
NCBI-ProteinID:
XP_015071504
LinkDB
All DBs
Position
4
AA seq
539 aa
AA seq
DB search
MLQSFKFGLYNFITSNSVGVILRKPKFQVLVSVNLTIMGSKKRPFSTSSATGKSNEQVSV
AAEKGVSKENGGKSGEVLVEDMETVEKMTVPQLRVKLRSLGIPSRGTKQELVASLKTFLD
SKLDDAGNGSVAQEDKVSSEESLEVAANPSKKKSRKVPSKNRNQSNVTSKVPTTRQTKKR
VTKGQTEDTSFDIIVKETEITQEMSIESNDIKGKKNVRAKRKVSSATASAHIGVSEAADL
SVNQDEPWTIFAHKKPKDGWIVYNPKTMRPPPLSKDTKHVKLLSWNVNGLRALLKLKNLC
IQQLADREDFDVICLQETKLQEKDVEAIKESLHDYKNSFWTCSVSKLGYSGTAIISRIKP
VSIKYGLGIPDHDTEGRLVTVEFDNFYLLCGYVPNSGDGLRRLTYRITEWDPSLGSYMKE
LEKSKPVVLTGDLNCAHEEIDIYNPTGNKRSAGFTEEERRSFETNFLNKGFVDTFRKQHP
GVVGYTYWGYRHGGRKTNKGWRLDYFLVSECISEKVHDSYILPDVDGSDHSPIGLVLKL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgttacaatcttttaagtttggtctttacaatttcatcacttccaatagtgttggagtc
attttaaggaaacccaagtttcaggttttggtttctgtgaatttgacgataatggggtct
aaaaaaagacccttttcaacctcatcagctactggaaaatcaaatgaacaagtgagtgtt
gcagctgaaaagggtgtttcaaaggaaaatggtggcaagagtggggaggttcttgtggag
gatatggaaacagtagagaaaatgactgttcctcagctcagagtaaaacttaggagtctt
gggattccttccagaggtactaagcaagaacttgttgcttctttgaagactttcctcgac
agcaaacttgatgatgcaggcaatggatctgtggcacaggaggataaagtatcatctgag
gagagtctagaagtagcagctaacccttcaaaaaagaagtccagaaaagtgccaagtaag
aatcgcaaccaaagcaacgtcacatccaaggttcctactactcggcagacgaaaaaacga
gtcacaaaaggccagactgaggataccagttttgacattattgttaaagaaactgaaatt
acccaagaaatgtccattgaatctaatgatatcaaaggcaagaaaaatgtacgagcaaag
agaaaagtttcatcggcgactgcttcagcacacataggagtttctgaggctgctgatctt
tctgtaaatcaagatgaaccttggactattttcgctcacaagaagcccaaagatgggtgg
attgtatacaatcctaaaacaatgaggccacctcctctttcaaaggatactaaacatgtt
aagttattgtcttggaatgtcaatggtctgagggctctattaaagttgaagaatctttgc
atacagcagcttgctgatagagaagattttgatgtaatatgcctacaggagactaaacta
caggaaaaagacgttgaagcgatcaaggaaagtctccatgactataagaatagcttttgg
acatgcagtgtctctaagcttggatattctggtactgcaatcatctcacgaattaaacca
gtttctatcaaatatggtctcggtataccagatcatgatactgaaggacgacttgttacg
gtggaatttgataacttctatttattgtgtggatatgttccaaattctggtgatggacta
cgccgattgacatacagaattaccgagtgggatccttctcttggcagttacatgaaagag
ctagagaagtcgaaacctgttgttttgaccggtgatctaaattgtgcccatgaggagata
gatatttataatcctactggaaataaaagaagtgcaggctttactgaagaagaaagacgg
tctttcgaaacgaactttctaaacaaggggtttgtagatacattcaggaagcagcatcct
ggtgttgttggttatacttattggggttaccgccatggtggacgtaaaactaataaagga
tggcggcttgactacttccttgtctcggaatgcatttctgagaaggtgcatgactcgtac
attctgccagatgtagatggcagcgatcacagtcccattggccttgtcctgaagctgtag
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