Solanum pennellii: 107017787
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Entry
107017787 CDS
T04130
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
spen
Solanum pennellii
Pathway
spen03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107017787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107017787
03019 Messenger RNA biogenesis [BR:
spen03019
]
107017787
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107017787
RNA polymerase I system
107017787
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
107017787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Spt5_N
DUF4438
ProQ_C
Motif
Other DBs
NCBI-GeneID:
107017787
NCBI-ProteinID:
XP_015073537
LinkDB
All DBs
Position
4:67673993..67690526
Genome browser
AA seq
1040 aa
AA seq
DB search
MPRHRDYDDDDDEPEEEEEDVYEEEDEEEEDDGGKAGRKRRRSDFIDDAAEEDDDEDEDD
DDEDYGGGGGGGGGRRRPKRRTGSEFFDLEAAVDSDEDEEEEEGEDDFIVDSGADIPDED
GARREYRHRLLPHEDQEEDLEELTRSIKQRYARSPHVEYDEEATDVEQQALLPSVRDPKL
WMVKCAIGREREVAVCLMQKAIDRGPELQIRSVVALDHLKNYIYIEADKEAHVREACKGM
RNIYASAKIMLVPIKEMTDVLSVESKAVDLARDTWVRMKMGTYKGDLAKVMDVDNVRQKV
VVKLIPRIDLQALANKLEGREAPKKKAFIPPPRFMNIDEAREMNLRVERRRDPMSGDYFE
NIGGMMFKDGFLYKTVSMKSIRTLNIQPTFDELEKFRQTGEGGDGDMASLSTLFANRKKG
HFMKGDRVIVVKGDLRNLKGHVEKVEEDTVHIRPNQKDLPLTLAFSDKELCKYFDLGNHV
KVVSGSSEGATGMVVSVQGHVVNLVSDTTKELLRVFADNVVESSEVTSGLTRIGEYELHD
LVILDNKSFGVIIRVDSEAFQVLKGVPDRPEVALVRLREIKAKVEKKGNAQDRYKNHLAV
KDVVKVLEGPCKGKQGPVEHIFRGVVFIYDRHHLEHAGYICAKTQSCVLIGGSRANGDRN
GNPMSSRFAHMRPPPRAPQSPMRSSRGGPPMSYGGRHRGGRGHDALVGADVKIRLGPFKG
CKGRVVDIKGTSVRVELEAQMKVVTVDRNHISDNVNVSVPFREPSRYGLGSETPSHPSRT
PLHPFMTPMRDPGATPIHDGMRTPMRDRAWNPMSPTSDRGGDWEDGNPASWGSSPQYQPS
SPRSRAYEAPTPGSGWTNTPSGNYSDAGTPRDNGSAYANAPSPYLPSTPGGQPPMTPSSA
YIPGTPGGQPMTPGSGGLDMMSPIGGGDTEGPWLLPDILVNVRKSNDDTVIGVVHEVLAD
GSCSVGLGSSGNGDTIIAHPTEIDIIVPKKSDKIKIMGGPQRGATGKLIGVDGTDGIVKV
DDTLDVKILDMVLLAKLAHA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccaccgggactacgacgacgatgacgatgaaccagaggaggaagaagaggac
gtgtatgaagaggaggacgaggaggaagaggacgatggagggaaggctggacggaaacga
cgtagatcagattttattgatgatgcggcggaggaagatgacgatgaggatgaggacgat
gatgatgaggattatggcggtggaggtggaggcggtggtgggagaagacgacctaaacgg
aggactggttcggagttttttgatctagaagctgctgtagatagtgatgaggatgaagag
gaagaagaaggcgaagatgatttcatagtagatagtggagcagatattcctgacgaggat
ggcgccagacgtgaatatcgtcaccgactgttgccgcacgaggaccaagaagaagacctt
gaggagcttacgagaagcattaagcaaagatatgcgaggtcacctcatgttgagtatgat
gaggaagcaacagatgttgagcagcaagctctcttgccatctgtcagggatccaaagctc
tggatggtgaaatgtgcgattggccgtgagagagaggttgcggtttgcctaatgcaaaag
gcaattgatagaggacctgaattgcaaattcgatcagttgtagcccttgatcatcttaag
aactatatatacatagaagcggacaaagaagctcacgtgagggaggcgtgcaagggtatg
cgcaatatatatgcctctgcgaaaataatgctggtccccataaaggagatgactgatgtc
ctttcagttgaaagcaaagcggttgatcttgccagggatacttgggtcagaatgaagatg
ggaacttacaagggagaccttgcaaaggttatggatgtagataatgtgagacagaaagtc
gtcgtgaaattaatcccaaggattgatttacaggctcttgcgaacaagttggaagggagg
gaagctccaaagaaaaaggcatttattcctccaccacgctttatgaatatcgatgaagct
agagagatgaacctacgtgtggaacgtaggcgagacccgatgtcaggtgactattttgag
aatattggaggtatgatgttcaaagatggtttcttgtataagacagtgtcaatgaaatca
atcaggaccctgaatatacagccaacttttgatgaactcgagaaattccggcaaactggt
gagggtggggatggcgatatggctagtctatctactttgtttgcaaataggaaaaaaggt
cattttatgaagggtgaccgcgttattgtggtgaagggggatctcagaaacttgaaaggc
catgttgagaaagtcgaagaagatactgttcatatcagaccaaatcagaaagaccttcct
ttgactttggcttttagtgacaaagagctatgcaagtactttgatcttggaaatcacgtg
aaagtagtatctggttcatctgaaggtgcaactggtatggttgtctctgttcagggacat
gtggttaacctggtatctgatacaacaaaggagcttctccgtgtatttgccgataatgtt
gttgagagttctgaagtaacatctggtctcactcgtattggggaatatgagctccatgat
cttgtaattctagacaataagagctttggtgtgattattcgtgtagacagtgaagccttc
caggtccttaagggtgtgcctgatagacctgaagtagcacttgttagacttagagagatc
aaagcgaaagttgaaaagaaaggaaatgcccaagatcggtataagaaccacttggcggtg
aaagacgtggtaaaagttctcgagggtccttgtaaaggaaaacaaggtcctgttgaacac
atcttcagaggagtagtttttatttatgatcgtcatcaccttgagcatgctggttatatt
tgtgccaaaacccaatcttgtgtgttgattggtggctcacgggcaaatggtgatagaaat
ggtaaccccatgtcatcaagatttgcgcatatgagacctccaccacgtgctcctcaatct
ccaatgagatcatctagaggtggcccacctatgagttatggaggcagacatagaggtgga
cgagggcacgatgctttagttggagctgacgtgaaaattcgccttggaccattcaaaggc
tgtaaagggcgtgttgttgatatcaaaggaacttcagtccgagttgaacttgaagcccag
atgaaagttgttacagttgatcgcaaccatatctctgataatgttaacgtgtcagtgccg
ttcagggaaccatctagatatggtttgggaagtgaaacaccatcacatccttcaaggact
ccactgcacccatttatgacacctatgagagatcctggagcaacacctatccatgatggc
atgaggacgccaatgcgtgacagagcatggaatccgatgagtccaactagtgacaggggg
ggtgattgggaagatggaaaccctgcttcctgggggtcaagtccgcaatatcagccatct
agtccacgttcaagggcgtatgaagcacctactcctggttctggttggactaatacacct
agcggtaattacagtgatgctggtaccccaagagacaatggttctgcatatgctaatgct
ccaagtccttacttgccatcaactcctggtggacaaccaccaatgacaccaagttcagca
tatatacctggtactcctggcgggcagccaatgactcctggaagtggtgggctggatatg
atgtcacctataggaggtggggatacagaaggtccttggctcttgcctgatatcttggtc
aatgtacggaagtccaatgatgatactgtcatcggagttgtccatgaggtgttagcggat
ggttcctgtagtgttggtcttggatcaagcggcaatggtgacactatcattgcgcaccca
actgaaattgatataattgtaccaaagaagtctgataaaatcaagataatgggtggtccc
caacgtggtgcaaccggcaagcttattggtgttgatggcactgatgggattgtaaaggtg
gatgatacccttgatgttaaaattttagacatggtacttttggccaagttagcgcatgca
tag
DBGET
integrated database retrieval system
