Rhizorhabdus wittichii DC-6: HY78_04315
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Entry
HY78_04315 CDS
T05200
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HY78_04315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_04315
Enzymes [BR:
sphd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HY78_04315
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HY78_04315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ARR52724
LinkDB
All DBs
Position
complement(893705..896233)
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AA seq
842 aa
AA seq
DB search
MARLDEYNRKRDFAKTREPAGTLETRGRHRFIVQKHDATRLHYDFRLEMDGVLKSWAVTR
GPSLDPEDKRLAVRTEDHPVSYGGFEGTIPEGEYGGGTVMLWDEGSWAPIAGKSELDLDK
GHLHFTLDGHRMKGEWLLVRIKGRPGEKRENWLLRKIDDGEAGGSDDLVAHALTSVKTGR
TMAQIAADKAGESSLKGKRGKAFDAIMAKSDAHNARVARRPAKGKPSTTPPPAFRKPQLA
TLVDHVPTGGAWIHEIKFDGYRALVAVAGDRVKIFTRTGLDWTDRFAPVAEAVAALGLPP
ALIDGEIVSLDAGGNPSFSALQKAIKGEGESGGSGGSGGFELFAFDLLSLDGDDLTGLGT
VERKARLAGLLPRSHPMIHYADHVVGAGEKLFDAMCRAGQEGIISKRADARYRAGRTTNW
LKVKCTRRQEFVIIGWSRSDSAARPFRALLLAQQGEDGLVYAGKVGTGFDRATMEMLAEK
FVARARKTPPADVPRAEAGGASWVRPDLVAEIGFAEFTDEGILRQASFIGLRSDKEAAEV
TAEKPMPVEEAARPEEAPVKISNPDRVIFPEAKATKGDLARYYQAVGPIILPWLGHRPIS
LVRCPQGRAKQCFFQKHDSGSFGEHVHHVPIREKDGKTEDYLYVEDVAGILACVQMGTIE
FHGWGSRVERIEMPDRMIFDLDPDVGLDFADVRTAAKDIRRLLSDIGLTSFAMLSGGKGV
HVVVPLRPEAEWPAVKDFAHRFAEAMAQAEPDRFVATMAKAKRVGRIFIDYLRNQRGATA
VVPYSARARENAPVAAPVAWNELDDFDKAGAFTIKDADRLLKRASSKALKGWGVADQVLP
DL
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcccggctcgacgaatataaccgcaagcgcgacttcgcgaagacgcgcgagccggcc
ggcaccctggagacgcgcggacgccaccgcttcatcgtccagaagcacgacgcgacccgg
ctgcactatgacttccggctggagatggacggcgtgctcaagagctgggcggtgacgcgc
ggccccagcctcgaccccgaagacaagcggctggcggtccgcaccgaggaccatccggtg
tcctatggcggtttcgaggggaccattcccgaaggcgaatatggcggcggcacggtgatg
ctgtgggacgagggcagctgggcgccgatcgcgggcaagagcgagctagacctcgacaag
ggccatctccacttcaccctcgacggccatcggatgaagggcgaatggctgctcgtccgg
atcaaggggcggccgggcgagaagcgcgagaactggctgctccgcaagatcgacgacggc
gaggcgggcggcagcgacgatctcgtcgcgcacgcgctgaccagcgtgaagaccgggcgg
accatggcccagatcgccgccgacaaggcgggcgaatcgagcctgaagggcaagcgcggc
aaggcgttcgacgcgatcatggcgaagtcggacgcgcacaacgcccgggtggcgcggcga
ccggccaaggggaaaccctcgaccacgccgccgccggccttccgcaagccgcagctcgcg
acgctggtcgatcatgtcccgaccggcggcgcctggatccacgagatcaagttcgacggc
tatcgcgccctggtcgcggtggccggggaccgggtgaagatcttcacccgcaccggcctc
gactggaccgaccgcttcgcgccggtggcggaggcggtcgccgcgctcggcctgccgccg
gcgctgatcgacggggagatcgtcagcctcgacgcggggggcaatcccagcttctccgcg
ctgcagaaggcgatcaagggcgaaggcgagagcgggggcagcggcggaagcgggggcttc
gagctgttcgccttcgacctgctctcgctcgacggcgacgacctcaccgggctcggcacg
gtcgagcgcaaggcgcggctcgccgggctgctgccccgcagccacccgatgatccactat
gccgaccatgtcgtcggcgcgggcgagaagctgttcgacgcgatgtgccgcgctgggcag
gaggggatcatctcgaagcgcgccgacgcgcgctaccgcgccgggcggacgaccaactgg
ctgaaggtcaaatgcacccggcggcaggagttcgtcatcatcggctggagccggagcgac
tccgccgcgcgtcccttccgcgcgctgctcctcgcgcagcagggcgaggacgggctggtc
tatgcgggcaaggtcggcaccggcttcgatcgcgcgacgatggagatgctggcggagaaa
ttcgtcgcccgcgcccgcaagaccccgcccgccgacgttccccgcgccgaggcgggcggc
gcgtcgtgggtccggcccgacctggtcgccgagatcggctttgccgagttcacggatgag
gggatattgcggcaggcgagcttcatcgggctgcgatccgacaaggaggccgccgaggtg
acagcggagaagcccatgcccgtcgaggaagccgcccggcccgaggaagcgccggtgaag
atcagcaaccccgaccgggtgatcttccccgaggcgaaggcgaccaagggcgatctcgcc
cgctattatcaggcggtcggtccgatcatcctgccctggctgggccaccgcccgatcagc
ctggtgcgctgcccgcaggggcgggcgaagcaatgcttcttccagaagcatgattcgggc
agcttcggcgagcatgtccaccatgtcccgatccgggagaaggacggcaagaccgaggat
tatctctatgtcgaggacgtcgccggcatcctcgcctgcgtccagatggggacgatcgag
ttccacggctggggctcgcgggtcgagcggatcgagatgcccgaccggatgatcttcgat
ctcgatcccgatgtcggtctcgatttcgccgacgttcgcacggcggcgaaggacattcgc
cggctgctgtccgacatcggcctgaccagcttcgcgatgctgtcgggcggcaagggcgtg
cacgtcgtcgtgccgctgcgtcccgaggcggagtggccggcggtcaaggacttcgcccat
cgcttcgccgaggcgatggcgcaggccgagcccgaccgcttcgtcgcgaccatggccaag
gcgaagcgggtcggccgcatcttcatcgactatctgcgcaaccagcgcggtgcgaccgcg
gtcgtcccctatagcgcgcgggcgcgcgagaacgcgcccgtggcggcgccggtggcctgg
aacgagctcgacgatttcgacaaggcgggcgccttcacgatcaaggatgccgaccggctg
ctcaagcgggcgtcgtcgaaggcgctcaagggctggggcgtggcggaccaggtgctgccg
gacctgtga
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