KEGG   Sphingomonas sp. FARSPH: DM480_09305Help
Entry
DM480_09305       CDS       T05685                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphf  Sphingomonas sp. FARSPH
Pathway
sphf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DM480_09305 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphf03400]
    DM480_09305 (ligD)
Enzymes [BR:sphf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DM480_09305 (ligD)
DNA repair and recombination proteins [BR:sphf03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DM480_09305 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: AXJ95678
UniProt: A0A345WPS6
LinkDB All DBs
Position
complement(1937796..1940246)
Genome map
AA seq 816 aa AA seqDB search
MTDALSAYNAKRDFAKTAEPAGMPEPGHGNSFVVQKHDATRLHWDFRLEIDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYASFEGTIPAGEYGGGTVMLWDRGTWAPVAGKSAADLD
KGHLHFVLEGERMKGEWLLIRLKPRGKERRENWLLRKIDDGFAGGTDVLTEEALTSVSTG
RTMQEIADGVRPRRIRDKTASRPQKNSPEPAANPSGPGGTSPAFIEPQLCTLVDAVPPGA
GWLHEVKYDGYRALVAVADGRARIFTRSGLDWTAKFAGIADAAAAIPGTALIDGEIVAFK
DGRPDFATLKDAIASGGDMTLFAFDLIEAEGEDLRDLPTIARKERLRALLPTNDRLHFAE
HVLGPGEPLFAAMCREGLEGVVSKRADAPYRSGRTRAWLKAKCIRRQEFVIVGWLASDKK
RGFKSLLLGVYEGGRLRYAGKVGTGFDARLMDEIAAKLARLSRKTPTVEAPRAMVRGAHW
VTPSLVAEIAFTEVTPDGLLRHPSFIGLRGDKPAAEVVVETPEPTPAPPAVAVKVSSRDR
VIFPDSQVTKGELADYYAALAPVMLPWTGRRPVSLVRCPQGRAKACFFQKHDAGSFGEHV
HHVDITEKDGSTQPYLWVDSADGLVACVQMGTIEFHGWGSTIDALERPDRLIFDLDPDEA
LGFADTKKAAQFIADQLAEIGLASFPLLSGGKGVHVVVPLTPQAEWPVVRDFAERFAKAL
AAADPDRFVAVMTKAKRKGRIFLDYLRNQRGSTAIMPYSARARAGAPVAVPVSWSELRDI
DTVARWSVTDRDELLARATSRALQGWGVADQVLPNL
NT seq 2451 nt NT seq  +upstreamnt  +downstreamnt
atgaccgacgccctttccgcctataacgccaagcgcgactttgcgaagaccgccgagcct
gccggcatgcccgaacccggccatggcaacagctttgtcgttcagaagcatgacgccacg
cgcctccactgggatttccggttggagatcgacggcgtactgaaaagctgggcggtgacg
cgcggccccagcctcgacccagacgagaaaaggctggcggtgcggacggaggatcacccc
ctgtcctatgcgtcgttcgaggggacgatcccggccggcgaatatggcggcggcacggtg
atgctgtgggaccgcggcacctgggcgcccgtcgcgggcaaatccgccgccgatctcgac
aaggggcatctgcatttcgtgctcgagggcgaacggatgaagggcgaatggctgctcatc
cgcctgaagccgcgcggcaaggagcgccgcgagaactggctgctgcgcaagatcgacgac
ggcttcgccggcggcaccgacgtgctgaccgaagaggcgctgaccagcgtgtcgaccggc
cggacgatgcaggagatcgccgatggcgtgcgccccaggcgcattcgcgacaagacggca
tcccgaccgcagaagaactcccccgaaccggcggccaacccgtccggacccggggggacg
tcgcccgccttcatcgaaccgcaattgtgcacgctcgtcgatgccgtcccgcccggcgcg
ggctggctgcacgaggtgaaatacgacggctatcgcgccctcgtcgcggtggcggacggg
cgtgcgaggatcttcacgcgcagcggcctcgactggaccgccaagttcgccggcatcgcc
gacgcggccgccgccatccccggcaccgcgctgatcgatggcgagatcgtcgccttcaag
gacggacgccccgatttcgcgacgctcaaagacgcgatcgcgagcgggggcgacatgacg
ctgtttgccttcgaccttatcgaagcggagggcgaggatttgcgcgaccttcccaccatc
gcgcgcaaagaacggctgcgtgccctgttgccgacgaacgatcgcctgcacttcgccgag
catgtgttgggaccgggcgagccgctgttcgcggcgatgtgccgcgaagggttagagggc
gtcgtctcgaaacgcgccgacgcgccctatcgatcgggccgtacgcgcgcctggctgaag
gcgaaatgcatccggcggcaggaattcgtcatcgtcggctggctcgcgtccgacaaaaag
cgcggcttcaaatcgctgctgctcggcgtgtacgagggcgggcggctgcgctatgcgggc
aaggtcgggaccgggttcgacgccaggctgatggacgagatcgcagcgaaactcgcccgc
ctgtcccgcaagacgcccacggtggaagcgccgcgcgcgatggtccgcggcgcgcattgg
gtgacgccgtcactggtcgcggagatcgcctttaccgaagtgacgcccgatggcctgctg
cgccatccaagcttcatcggtctgcgcggggacaagcccgcggcggaggtggtggtcgaa
acgcccgaaccgacgcccgcgccccccgccgtcgcggtgaaggtgtcgagccgcgaccgg
gtcatttttcccgacagccaagtcaccaagggcgagctcgccgattattatgccgcgctg
gcgcccgtcatgctgccgtggacggggcggcggccggtcagcctggtccgctgcccgcag
gggcgcgccaaggcgtgctttttccagaagcacgacgcgggcagcttcggcgagcatgtc
catcacgtcgacatcaccgagaaggacggcagcacgcagccctatctatgggtcgacagc
gccgacgggctcgtcgcctgcgtgcagatgggaacgatcgaattccatggttggggatcg
acgatcgatgcgctggagcggcccgatcgcctgatcttcgatctcgatccggacgaagcg
ctgggctttgccgatacgaagaaggcggcgcagttcatcgccgaccagctggccgagatc
ggccttgccagctttccgctgctgtcgggtggcaagggcgtgcatgtcgtcgtgccgctg
accccgcaggccgaatggccggtggtgcgcgatttcgccgaacgcttcgccaaggcgctc
gccgccgccgaccccgaccgcttcgtcgcggtgatgacgaaggcgaagcgcaaagggcgc
atcttcctcgattacctgcgcaaccagcgcggcagcaccgcgatcatgccctattcggcg
cgcgcccgcgcgggtgcgcccgttgcggtgccggtgtcgtggagcgagctgcgcgacatc
gatacggtggcgcgctggtcggtgacggatcgcgacgaactgctggcgagggcgacgtcg
cgcgcgctgcaaggctggggcgtcgcggaccaagtgttgccgaacctgtga

DBGET integrated database retrieval system