Sphingomonas sp. FARSPH: DM480_09305
Help
Entry
DM480_09305 CDS
T05685
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DM480_09305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_09305 (ligD)
Enzymes [BR:
sphf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DM480_09305 (ligD)
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DM480_09305 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AXJ95678
UniProt:
A0A345WPS6
LinkDB
All DBs
Position
complement(1937796..1940246)
Genome browser
AA seq
816 aa
AA seq
DB search
MTDALSAYNAKRDFAKTAEPAGMPEPGHGNSFVVQKHDATRLHWDFRLEIDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYASFEGTIPAGEYGGGTVMLWDRGTWAPVAGKSAADLD
KGHLHFVLEGERMKGEWLLIRLKPRGKERRENWLLRKIDDGFAGGTDVLTEEALTSVSTG
RTMQEIADGVRPRRIRDKTASRPQKNSPEPAANPSGPGGTSPAFIEPQLCTLVDAVPPGA
GWLHEVKYDGYRALVAVADGRARIFTRSGLDWTAKFAGIADAAAAIPGTALIDGEIVAFK
DGRPDFATLKDAIASGGDMTLFAFDLIEAEGEDLRDLPTIARKERLRALLPTNDRLHFAE
HVLGPGEPLFAAMCREGLEGVVSKRADAPYRSGRTRAWLKAKCIRRQEFVIVGWLASDKK
RGFKSLLLGVYEGGRLRYAGKVGTGFDARLMDEIAAKLARLSRKTPTVEAPRAMVRGAHW
VTPSLVAEIAFTEVTPDGLLRHPSFIGLRGDKPAAEVVVETPEPTPAPPAVAVKVSSRDR
VIFPDSQVTKGELADYYAALAPVMLPWTGRRPVSLVRCPQGRAKACFFQKHDAGSFGEHV
HHVDITEKDGSTQPYLWVDSADGLVACVQMGTIEFHGWGSTIDALERPDRLIFDLDPDEA
LGFADTKKAAQFIADQLAEIGLASFPLLSGGKGVHVVVPLTPQAEWPVVRDFAERFAKAL
AAADPDRFVAVMTKAKRKGRIFLDYLRNQRGSTAIMPYSARARAGAPVAVPVSWSELRDI
DTVARWSVTDRDELLARATSRALQGWGVADQVLPNL
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgccctttccgcctataacgccaagcgcgactttgcgaagaccgccgagcct
gccggcatgcccgaacccggccatggcaacagctttgtcgttcagaagcatgacgccacg
cgcctccactgggatttccggttggagatcgacggcgtactgaaaagctgggcggtgacg
cgcggccccagcctcgacccagacgagaaaaggctggcggtgcggacggaggatcacccc
ctgtcctatgcgtcgttcgaggggacgatcccggccggcgaatatggcggcggcacggtg
atgctgtgggaccgcggcacctgggcgcccgtcgcgggcaaatccgccgccgatctcgac
aaggggcatctgcatttcgtgctcgagggcgaacggatgaagggcgaatggctgctcatc
cgcctgaagccgcgcggcaaggagcgccgcgagaactggctgctgcgcaagatcgacgac
ggcttcgccggcggcaccgacgtgctgaccgaagaggcgctgaccagcgtgtcgaccggc
cggacgatgcaggagatcgccgatggcgtgcgccccaggcgcattcgcgacaagacggca
tcccgaccgcagaagaactcccccgaaccggcggccaacccgtccggacccggggggacg
tcgcccgccttcatcgaaccgcaattgtgcacgctcgtcgatgccgtcccgcccggcgcg
ggctggctgcacgaggtgaaatacgacggctatcgcgccctcgtcgcggtggcggacggg
cgtgcgaggatcttcacgcgcagcggcctcgactggaccgccaagttcgccggcatcgcc
gacgcggccgccgccatccccggcaccgcgctgatcgatggcgagatcgtcgccttcaag
gacggacgccccgatttcgcgacgctcaaagacgcgatcgcgagcgggggcgacatgacg
ctgtttgccttcgaccttatcgaagcggagggcgaggatttgcgcgaccttcccaccatc
gcgcgcaaagaacggctgcgtgccctgttgccgacgaacgatcgcctgcacttcgccgag
catgtgttgggaccgggcgagccgctgttcgcggcgatgtgccgcgaagggttagagggc
gtcgtctcgaaacgcgccgacgcgccctatcgatcgggccgtacgcgcgcctggctgaag
gcgaaatgcatccggcggcaggaattcgtcatcgtcggctggctcgcgtccgacaaaaag
cgcggcttcaaatcgctgctgctcggcgtgtacgagggcgggcggctgcgctatgcgggc
aaggtcgggaccgggttcgacgccaggctgatggacgagatcgcagcgaaactcgcccgc
ctgtcccgcaagacgcccacggtggaagcgccgcgcgcgatggtccgcggcgcgcattgg
gtgacgccgtcactggtcgcggagatcgcctttaccgaagtgacgcccgatggcctgctg
cgccatccaagcttcatcggtctgcgcggggacaagcccgcggcggaggtggtggtcgaa
acgcccgaaccgacgcccgcgccccccgccgtcgcggtgaaggtgtcgagccgcgaccgg
gtcatttttcccgacagccaagtcaccaagggcgagctcgccgattattatgccgcgctg
gcgcccgtcatgctgccgtggacggggcggcggccggtcagcctggtccgctgcccgcag
gggcgcgccaaggcgtgctttttccagaagcacgacgcgggcagcttcggcgagcatgtc
catcacgtcgacatcaccgagaaggacggcagcacgcagccctatctatgggtcgacagc
gccgacgggctcgtcgcctgcgtgcagatgggaacgatcgaattccatggttggggatcg
acgatcgatgcgctggagcggcccgatcgcctgatcttcgatctcgatccggacgaagcg
ctgggctttgccgatacgaagaaggcggcgcagttcatcgccgaccagctggccgagatc
ggccttgccagctttccgctgctgtcgggtggcaagggcgtgcatgtcgtcgtgccgctg
accccgcaggccgaatggccggtggtgcgcgatttcgccgaacgcttcgccaaggcgctc
gccgccgccgaccccgaccgcttcgtcgcggtgatgacgaaggcgaagcgcaaagggcgc
atcttcctcgattacctgcgcaaccagcgcggcagcaccgcgatcatgccctattcggcg
cgcgcccgcgcgggtgcgcccgttgcggtgccggtgtcgtggagcgagctgcgcgacatc
gatacggtggcgcgctggtcggtgacggatcgcgacgaactgctggcgagggcgacgtcg
cgcgcgctgcaaggctggggcgtcgcggaccaagtgttgccgaacctgtga
DBGET
integrated database retrieval system