Sphingomonas hengshuiensis: TS85_18230
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Entry
TS85_18230 CDS
T03848
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TS85_18230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphi03400
]
TS85_18230
Enzymes [BR:
sphi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TS85_18230
DNA repair and recombination proteins [BR:
sphi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TS85_18230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJP73319
UniProt:
A0A7U4LGM3
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Position
complement(4034458..4036890)
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AA seq
810 aa
AA seq
DB search
MADTPLARYNAKRDFGLTEEPEGLVAATGGNRFIVQKHDATRLHWDFRLEVDGVLKSWAV
TRGPSLDPDEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWEPVKGKSAKDL
DKGHLHFRLDGHRMKGEWLLIRLKPRGKEKAENWLLRKLDDGYAGATDALVETGLTSVAT
GRTMQEIAEGAAVVATSGPPPTPPASGRGAKPPPFQPVQLATLVDSVPTGSDWLHEVKYD
GYRALLATGKAAKVYTRSGLDWTEKFPGIAEAAAGLPPGALIDGEIVAFKEGRPDFSTLQ
DAISNGGAGLTLFAFDLLQDAGEDLTALGQLARKERLRALLAGADARIQFSEHIVGAGEQ
LFETMCREGYEGIVSKRAAAPYRGARTKSWLKVKCTRRQEFVIIGWMPSTAKGRGFRSLL
LGVNGPEGLVYAGKVGTGFSTDTLHALRETLDGIATDKAPLSVPRAESRGAHWVKPELVA
EIAFAEFTAEKVVRHASFLGLRGDKKPAEVVAETPVPLPEPVATSHIKISSRDRVIYPEA
GLTKGQLADYYAAVAPIALRWLGNRPISLVRCPQGRAKQCFFQKHDAGSFGDDVHHVDVR
EKDGSTEPYLYIDSLDGMLACVQMGTIEFHGWGSLVADIEKPDRLVFDLDPDEGLDFEAV
KKAAADLKDHLADMGLTSWPLLSGGKGVHVVVPLVPRVEWPEVRSFAERFARALAQAEPD
RFTANLKKASRTGKIFIDYLRNQRGATAVLPYVARAREGAPVAAPVTWTELRTIDSAKLY
SIRDAATLIERAQSRALQGWGEAAQALPDV
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacgcccctcgcccgatacaatgccaaacgcgatttcggtctgaccgaggag
cctgaggggctggtcgccgcgactgggggcaaccgtttcatcgtgcagaagcatgacgcg
acgcggctccactgggatttccggctcgaagtggacggggtgctcaagagctgggcggtg
acgcgcgggccgagcctcgatccggacgagaaacggctcgcggtgcggaccgaggaccat
cctttgtcctatgccgatttcgaggggacgatccccaagggccaatatggcggcggcacg
gtgatgctgtgggatgacggcgtgtgggagccggtcaagggcaagtcggcgaaggacctc
gacaaggggcatctccacttccggctcgacgggcaccggatgaagggcgagtggctgctg
atccggctgaagccgcgcggcaaggaaaaggccgagaactggctgctgcgcaagctcgac
gacggctatgcgggcgcgaccgacgcgctggtcgagaccgggctgaccagcgtcgccacc
gggcggacgatgcaggagattgccgagggcgcggcggtcgtggctacctcaggccctccc
ccgacccctcccgcaagcggaaggggagccaaaccgccccccttccagccggtgcagctt
gcgacgctggtggacagcgttccgaccggcagcgactggctgcacgaggtgaagtatgat
ggctatcgcgcgctgctcgccacgggcaaggcggcgaaggtctacacccgctcgggcctc
gactggaccgagaaatttcccggcatcgccgaggcggcggcgggccttccccccggcgcg
ctgatcgatggcgagattgtcgcgttcaaggagggcaggcccgatttctcgacgctccag
gacgctatttcgaacggaggcgcggggttgacgctattcgcgttcgacctgctccaggac
gcgggcgaggacctcaccgcgctcgggcagctcgcccgcaaggagcggctccgcgcgctg
ctggcgggtgcggacgcgcgcatccagttttccgagcatatcgtcggcgcgggcgagcaa
ttgttcgagacgatgtgccgcgaaggctatgaggggattgtgtcgaagcgcgccgccgcg
ccctatcgcggcgcgcggaccaagagctggctcaaggtcaaatgcacccgccgccaggaa
ttcgtgattatcggctggatgccgagcaccgcgaaggggcgcggcttccgctcgctgctg
ctcggcgtcaacgggcccgaggggctggtctatgcggggaaggtcgggaccgggttcagc
accgatacgctccacgcgctgcgcgagacgctggacgggattgcgaccgacaaggcgccg
ctgagcgtgccgcgtgccgagtcgcggggggcgcactgggtgaagcccgagctggtcgcc
gagatcgcctttgccgaattcactgccgagaaggtcgtgcgccatgcgagtttcctcggg
ctgcgcggcgacaagaagccggcggaggtggtcgccgaaacccccgtgccgctccccgag
cccgtcgcgacgtcgcacatcaagatcagcagccgcgaccgggtgatctatcccgaggcg
gggctgaccaaggggcagctcgccgattattacgccgcggtcgcgccgatcgcgctgcgc
tggctgggcaatcgcccgatcagcctggtccgctgcccgcaggggcgggcgaagcaatgt
ttcttccagaagcacgatgccggcagctttggcgacgacgtccaccatgtcgatgtgcgc
gagaaggacgggtcgaccgagccctatctctatatcgacagcctcgacgggatgctggcg
tgcgtccagatggggacgatcgagtttcacggctggggcagcctggtcgccgatatcgag
aagcccgatcggctggtgttcgacctcgaccccgatgaggggctcgatttcgaggcggtg
aagaaggcggcggcggacctcaaggaccatctcgcggacatggggctgacgagctggccg
ctgctgtcggggggcaagggcgtgcatgtcgtggtgcctttggtcccgcgtgtcgaatgg
cccgaggtgcgcagcttcgccgaacgcttcgcgcgcgcgctggcccaggccgagcccgat
cgcttcaccgccaacctgaaaaaggccagccggacggggaagatcttcatcgattacctg
cgcaatcagcgcggcgcgaccgccgtgctcccctatgtcgcccgcgcccgcgaaggcgcg
ccggtggcggcgcccgtcacctggaccgagctgcgcaccatcgacagcgccaagctctac
tcgatccgcgacgccgcgacgctgatcgagcgcgcgcaaagccgggcgttgcagggatgg
ggcgaggcggcgcaggcgctgccggacgtatag
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