Sphingomonas sp. MM-1: G432_04400
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Entry
G432_04400 CDS
T02498
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphm
Sphingomonas sp. MM-1
Pathway
sphm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G432_04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphm03400
]
G432_04400
Enzymes [BR:
sphm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G432_04400
DNA repair and recombination proteins [BR:
sphm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G432_04400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
FIST
Motif
Other DBs
NCBI-ProteinID:
AGH48607
UniProt:
M4SD88
LinkDB
All DBs
Position
complement(915309..917858)
Genome browser
AA seq
849 aa
AA seq
DB search
MARAKSAVSRAAGKPRPKPKVRAAAAKGEAALDRYRAMRDFSRTAEPSGATRPASGHGFV
VQKHDATRLHYDFRLEMDGVLKSWAVTRGPSPDPADKRLAVRTEDHPLDYAHFEGTIPKG
QYGGGTVMLWDEGTWEPMPGKDPRRTLEEGHLHFILHGRRMKGEWLLVRLKPRAGEKREN
WLLRKVDDDFAGGPDDLVGQYLTSVESGRSMAEIADGAAPPKRATAKAAAGTGKAKPATM
RGRADSPPPFRPVQLATLVDHAPAGDRWLHELKYDGYRLLLAVGGGKARAYTRSGLDWSD
RFPAVVAEAAGLAVRSALIDGEAVVLDAEGRSSFQALQAALKGDPAAIIFFAFDLLTRDG
EDLTALPLLERKQRLAALIGAGGDHLHYADHVAGRGEAFFQKACKAGLEGIVSKRADAAY
AGGRSGSWVKVKCLHRQEFVLLGWTSSDRNSGFRSLLLGLNEEGGLRYAGKVGTGFDMAE
IDRLLAAMKPLETATAPVSAPRAATRGAHWIEPRLVVEVAFTEFTGDGVLRHPSYIGLRE
DKPAEAVIREEEVPVAELAERSPSPVRITNRDRVIFPDAGITKGALADYYEAIAPAMLPW
VANRPISLVRCPQGRARKCFFQKHDAGSFGDHVHHIPIREKDGGEEPYLYIEDAAGLLAC
VQMGTIEFHGWGAPIADIERPDRLVFDLDPDEGLEFGEVTAAAAHIRDELAAIGLATFAM
VTGGKGVHVVAPLRPEAEWPEVKDFARRFATALAETQPQRFTSALAKARRKGRIFVDYLR
NERGATAVMPYSARAREGAPVAAPLTWEELRALDRPAPWHVGDVDDLVRRAASRDLAGWG
RADQALPGV
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcgaaatccgccgtgtcccgcgccgcgggcaaaccccggccgaaacccaaa
gtgagggcggcggcggcgaagggcgaggcggcgctcgatcgctatcgcgcgatgcgcgat
ttcagccgcacggccgaaccttccggtgcgacgcggccggcatcggggcacggcttcgtc
gtccagaagcatgatgccacccggctccattatgatttccggctggaaatggatggcgtg
ctgaaaagctgggcggtcacgcgcggccccagccccgatccggcggacaagcggctggcg
gtgcggacggaggatcatccgctcgattacgcccatttcgaaggcaccatccccaagggc
caatatggcggcggcacggtgatgctgtgggacgagggcacgtgggagccgatgcccggc
aaggacccgcgccgcacgctcgaggaaggccatctccatttcatcctccatggccgccgg
atgaagggggaatggctgctcgtccgcctcaagccccgcgccggggaaaagcgcgagaac
tggctgctccgcaaggtggacgatgatttcgcgggcgggccggacgatctggtcggccaa
tatctcaccagcgtggaaagcgggcgcagcatggccgagatcgccgatggcgcggccccg
ccgaagcgggccaccgcgaaggcggcggccgggacggggaaggcgaagcccgccacgatg
cggggccgcgcggattcgcctccgcccttccggccggtgcagcttgccacgctggtcgat
catgcgcccgccggcgaccgttggctgcatgagctgaaatatgacggctatcgcctgctg
ctggcggtgggcggcggcaaggcgcgggcctatacccgctccggcctcgactggtcggat
cgctttcccgctgtcgtcgccgaggccgccggccttgccgtccgttccgcgctgatcgac
ggcgaggcggtggtgctggatgcggaagggcggtccagcttccaggcgctccaggccgcg
ctcaagggcgatccggcggcgatcatcttcttcgccttcgatctcctcacccgcgatggc
gaggatctgacggcgttgccgctcctcgagcgcaagcagcggctggcggcgctgatcggg
gcgggcggcgatcatctgcattatgccgatcatgtcgccggccggggcgaggcctttttc
cagaaggcgtgcaaggcggggctggagggcatcgtctcgaaacgggcggacgcggcctat
gccggcgggcgatccggcagctgggtgaaggtgaagtgcctccaccgccaggaattcgtg
ctgctgggctggacctcgtcggacaggaacagcggcttccgatccctgctcctcggcctc
aacgaggagggcgggctgcgttacgccggcaaggtcggcaccggcttcgacatggccgag
atcgatcgcctgctcgccgcgatgaagccgctcgaaaccgccacggccccggtctccgcc
ccccgtgccgcgacccgcggcgcccattggatcgaaccccggctggtcgtggaggtcgcc
ttcaccgaattcacgggcgacggcgttctccgccacccgagctatatcggcctgcgcgag
gacaagcccgccgaagccgtcatccgggaggaggaagtgcccgtggccgagcttgccgaa
cgatcgcccagccccgtgcggatcaccaatcgcgatcgggtgatcttccccgatgccgga
atcaccaagggcgcgctcgccgattattatgaggcgatcgcgccggcgatgctgccctgg
gttgcgaaccggccgatcagccttgtccgctgcccgcagggccgggcgcgaaaatgcttc
ttccagaaacatgatgccggcagcttcggcgatcatgtccaccacatccccatccgcgag
aaggacggcggggaggagccctatctctatatcgaggatgccgccggcctgctcgcctgc
gtgcagatgggcacgatcgaattccacggctggggcgccccgatcgccgatatcgagcgg
ccggaccggctggtcttcgatctcgacccggacgaggggctggaattcggcgaggtcacg
gccgccgccgcccatatccgcgacgagcttgccgccatcggcctggcgaccttcgcgatg
gtcacgggcggaaagggcgtccatgtcgtggcgccgctgcggccggaagcggaatggccg
gaggtcaaggatttcgcccgccgcttcgcgacagcgctggcggagacccagccccagcgc
ttcacctcggccttggccaaggcgcggcggaaggggcgcatcttcgtcgattatctgcgc
aacgagcggggtgcgacggcggtgatgccctattccgccagggcgagggagggcgccccg
gtcgcagcgcccctgacctgggaggaattgcgcgcgctggacaggcccgcgccctggcat
gtcggcgatgtggacgatctggttcgccgcgcggcctcccgcgatctggcgggctggggc
agggccgatcaggcgctgcccggcgtgtga
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