Sphingopyxis sp. 113P3: LH20_17000 Help Entry LH20_17000        CDS       T04069                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism sphp  Sphingopyxis sp. 113P3 Pathway sphp03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:sphp00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     LH20_17000  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:sphp03400]     LH20_17000 Enzymes [BR:sphp01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      LH20_17000 DNA repair and recombination proteins [BR:sphp03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      LH20_17000 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  ALC13660 UniProt:  A0A0M4D143 LinkDB All DBs Position 3451589..3454102 Genome browser AA seq 837 aa AA seqDB search MARADPLAPYNAKRDFALTPEPAGKIEKGAGHRFIVQKHDATRLHYDFRLEADGVLKSWA VTKGPSANPDDKRLAVRTEDHPMAYAEFEGVIPKGEYGGGTVMLWDSGSWAPVEGKSAKD IEKGHLHFILDGQRMKGEWLLVRMKPRPGEKRENWLLRKVKDAEAGGSDDLTGRHLTSVL TGRTMAEIAGDEGGEQSLEGAKGAAFTKKMKAAAAHNRKVARPRANARRARPPGFRPLQL ATLVDAVPAGNGWMHEIKFDGYRAEIAAAGRDVHVYTRSGLDWTEKFAPLVRHIAALDLP PCLIDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEQTELRFFAFDLLEEGGKSLANLGNL ERKERLEALLRDASPPIAVADHVIGAGETLYGAMCKAGQEGIISKRADAAYSGRRTKNWV KVKCTRRQEFIIVGWKPSSTKQRPFSSLLLAQCEGDELVYKGNVGTGFDTKVMAELAKQF ARRERKSAPLEVDKAAARHVRWLRPDLVAEIAFAEFTASGSVRHASFLGLRHDKEAKDVT PETPQPAPAPDSDIVITNRERVIFPEAKATKGDLADYYAAVAPVMLPHMARRPVSLVRCP QGRAKKCFFQKHDAGSFGGHVHHVPIREKDGGHEDYLYVEDAEGILACVQMGTIEFHGWD SHVDALETPDRMVFDLDPDEGLGFAEVKKAAVDLRRQLADIGLVSFAMLSGGKGIHVVVP LEPGHSWEKHKDFSKRFAEALSLAEPDRYVATMSKAKRKGKIFIDYLRNQRGSTAIMPYS ARAREGAPVAAPIGWDALAGIESPARWTIGDAEELLTRAASAELKGWGFAQQKLPDF NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt atggcacgcgcagaccccctcgccccttacaacgccaagcgcgacttcgcgctgaccccc gaacctgcggggaagatcgaaaaaggtgcaggtcaccgcttcatcgtccagaagcatgat gcgacgcgcctccattatgactttcgcctcgaagccgacggcgtgctcaagagctgggcg gtgaccaaggggccgagcgccaaccccgacgacaagcgccttgccgtgcgtaccgaggat catccgatggcctatgccgaattcgagggcgtgattccgaagggcgaatatggcggcggc acggtgatgctgtgggacagtggcagctgggcgccggtcgagggaaaaagcgcgaaggac atcgaaaagggccacctccacttcatcctcgacgggcagcggatgaagggcgagtggctg ctcgtccgcatgaaaccgcgtccgggcgagaagcgtgagaattggctccttcgcaaggta aaggatgccgaggccggcgggagcgacgatctgaccggccgccacctcaccagcgtgctc acgggacgcacgatggccgagatcgcgggcgacgagggcggcgagcaatcgctcgaaggc gcaaagggcgcggccttcacgaagaagatgaaggcggccgcggcgcataacaggaaggtc gccaggccaagggcgaacgccaggcgcgcgaggccccccggatttcgtccgctgcagctt gcaacgctggtcgatgcagtgccggcgggaaacggctggatgcacgagatcaaattcgat ggctatagagccgagatcgcagcggccggccgcgacgtgcacgtctacacgcgaagcggg ctcgactggaccgaaaaattcgcgccgctcgtgcgtcacattgccgcgctcgacctgccg ccgtgcctgatcgacggcgagatcgttgcctatggcaaggatggcaaccccgacttctca tcgctgcaggccgtgctgaagcgcggtcacggggcgcaggacgagcagaccgagctgcga ttcttcgcgttcgatctgctcgaagaaggcggaaagtcgctcgcgaaccttggcaatctg gaacgcaaggaacggctggaagcgctgctgcgcgatgcgagccccccaatcgcggtcgcg gaccatgtgatcggcgcgggcgaaaccctttacggcgcaatgtgcaaggcaggacaggaa ggcattatttcaaagcgcgccgacgcggcctattccggccgccgcacgaaaaactgggtc aaggtgaaatgcacccggcggcaggaattcatcatcgtcggctggaagccctcgtcgacg aagcagcgccccttctcctcgctgctgctcgcgcagtgcgagggcgacgaacttgtctac aagggcaatgtcggaacgggcttcgacacgaaggtcatggccgagcttgcgaagcagttt gcgcggcgcgagcgcaagagcgcgccgctcgaggttgacaaggctgcggcgcgccatgtc cgatggctgaggcccgacctcgtcgccgaaatcgcctttgctgaattcaccgcaagcgga tcggtgcgccatgcaagttttctgggcttgcgccacgacaaggaggcaaaggacgtgacc cccgaaacgccgcagcccgctcccgcgcccgacagcgacatcgtgatcaccaaccgcgag cgggtgatctttcccgaggccaaggcgaccaagggagatctcgccgactattatgcagcc gtcgcgcccgtcatgctcccgcacatggctcggcgtcccgtcagcctcgtacgctgtccg caggggcgggcgaaaaaatgcttcttccaaaagcatgacgcgggaagcttcggcggccat gtccatcatgtcccgatccgcgagaaggacggaggacacgaggattatctttacgtcgag gatgcggaaggcatcctcgcctgcgtccagatgggaacgatcgagtttcacggctgggac agccacgtcgacgcgctcgagacacccgatcgcatggtctttgacctcgatcccgatgag gggctcggctttgccgaggtcaagaaggcggcggtcgaccttcgccgccagctcgccgac atcggccttgtcagcttcgccatgctctcgggcggaaagggcatccacgtcgtggtgccg ctcgagcctgggcatagctgggagaagcacaaggatttctcgaagcgtttcgccgaagcg ctgagcctcgccgagcccgatcgctatgtcgccacgatgagcaaggcaaagcgcaaggga aagatcttcatcgattatctgcgcaaccagcgcggcagcactgcgatcatgccctactcg gcgcgcgcgcgcgaaggcgcgcccgtcgccgccccgatcgggtgggacgcgcttgcgggc atcgaaagcccggcccgctggaccatcggcgacgccgaggagcttctgacccgcgccgcg agcgccgagctcaagggctggggctttgcccagcagaagctgcccgatttctga

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