KEGG   Sphingopyxis sp. 113P3: LH20_17000Help
Entry
LH20_17000        CDS       T04069                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphp  Sphingopyxis sp. 113P3
Pathway
sphp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LH20_17000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphp03400]
    LH20_17000
Enzymes [BR:sphp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LH20_17000
DNA repair and recombination proteins [BR:sphp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LH20_17000
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ALC13660
UniProt: A0A0M4D143
LinkDB All DBs
Position
3451589..3454102
Genome map
AA seq 837 aa AA seqDB search
MARADPLAPYNAKRDFALTPEPAGKIEKGAGHRFIVQKHDATRLHYDFRLEADGVLKSWA
VTKGPSANPDDKRLAVRTEDHPMAYAEFEGVIPKGEYGGGTVMLWDSGSWAPVEGKSAKD
IEKGHLHFILDGQRMKGEWLLVRMKPRPGEKRENWLLRKVKDAEAGGSDDLTGRHLTSVL
TGRTMAEIAGDEGGEQSLEGAKGAAFTKKMKAAAAHNRKVARPRANARRARPPGFRPLQL
ATLVDAVPAGNGWMHEIKFDGYRAEIAAAGRDVHVYTRSGLDWTEKFAPLVRHIAALDLP
PCLIDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEQTELRFFAFDLLEEGGKSLANLGNL
ERKERLEALLRDASPPIAVADHVIGAGETLYGAMCKAGQEGIISKRADAAYSGRRTKNWV
KVKCTRRQEFIIVGWKPSSTKQRPFSSLLLAQCEGDELVYKGNVGTGFDTKVMAELAKQF
ARRERKSAPLEVDKAAARHVRWLRPDLVAEIAFAEFTASGSVRHASFLGLRHDKEAKDVT
PETPQPAPAPDSDIVITNRERVIFPEAKATKGDLADYYAAVAPVMLPHMARRPVSLVRCP
QGRAKKCFFQKHDAGSFGGHVHHVPIREKDGGHEDYLYVEDAEGILACVQMGTIEFHGWD
SHVDALETPDRMVFDLDPDEGLGFAEVKKAAVDLRRQLADIGLVSFAMLSGGKGIHVVVP
LEPGHSWEKHKDFSKRFAEALSLAEPDRYVATMSKAKRKGKIFIDYLRNQRGSTAIMPYS
ARAREGAPVAAPIGWDALAGIESPARWTIGDAEELLTRAASAELKGWGFAQQKLPDF
NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt
atggcacgcgcagaccccctcgccccttacaacgccaagcgcgacttcgcgctgaccccc
gaacctgcggggaagatcgaaaaaggtgcaggtcaccgcttcatcgtccagaagcatgat
gcgacgcgcctccattatgactttcgcctcgaagccgacggcgtgctcaagagctgggcg
gtgaccaaggggccgagcgccaaccccgacgacaagcgccttgccgtgcgtaccgaggat
catccgatggcctatgccgaattcgagggcgtgattccgaagggcgaatatggcggcggc
acggtgatgctgtgggacagtggcagctgggcgccggtcgagggaaaaagcgcgaaggac
atcgaaaagggccacctccacttcatcctcgacgggcagcggatgaagggcgagtggctg
ctcgtccgcatgaaaccgcgtccgggcgagaagcgtgagaattggctccttcgcaaggta
aaggatgccgaggccggcgggagcgacgatctgaccggccgccacctcaccagcgtgctc
acgggacgcacgatggccgagatcgcgggcgacgagggcggcgagcaatcgctcgaaggc
gcaaagggcgcggccttcacgaagaagatgaaggcggccgcggcgcataacaggaaggtc
gccaggccaagggcgaacgccaggcgcgcgaggccccccggatttcgtccgctgcagctt
gcaacgctggtcgatgcagtgccggcgggaaacggctggatgcacgagatcaaattcgat
ggctatagagccgagatcgcagcggccggccgcgacgtgcacgtctacacgcgaagcggg
ctcgactggaccgaaaaattcgcgccgctcgtgcgtcacattgccgcgctcgacctgccg
ccgtgcctgatcgacggcgagatcgttgcctatggcaaggatggcaaccccgacttctca
tcgctgcaggccgtgctgaagcgcggtcacggggcgcaggacgagcagaccgagctgcga
ttcttcgcgttcgatctgctcgaagaaggcggaaagtcgctcgcgaaccttggcaatctg
gaacgcaaggaacggctggaagcgctgctgcgcgatgcgagccccccaatcgcggtcgcg
gaccatgtgatcggcgcgggcgaaaccctttacggcgcaatgtgcaaggcaggacaggaa
ggcattatttcaaagcgcgccgacgcggcctattccggccgccgcacgaaaaactgggtc
aaggtgaaatgcacccggcggcaggaattcatcatcgtcggctggaagccctcgtcgacg
aagcagcgccccttctcctcgctgctgctcgcgcagtgcgagggcgacgaacttgtctac
aagggcaatgtcggaacgggcttcgacacgaaggtcatggccgagcttgcgaagcagttt
gcgcggcgcgagcgcaagagcgcgccgctcgaggttgacaaggctgcggcgcgccatgtc
cgatggctgaggcccgacctcgtcgccgaaatcgcctttgctgaattcaccgcaagcgga
tcggtgcgccatgcaagttttctgggcttgcgccacgacaaggaggcaaaggacgtgacc
cccgaaacgccgcagcccgctcccgcgcccgacagcgacatcgtgatcaccaaccgcgag
cgggtgatctttcccgaggccaaggcgaccaagggagatctcgccgactattatgcagcc
gtcgcgcccgtcatgctcccgcacatggctcggcgtcccgtcagcctcgtacgctgtccg
caggggcgggcgaaaaaatgcttcttccaaaagcatgacgcgggaagcttcggcggccat
gtccatcatgtcccgatccgcgagaaggacggaggacacgaggattatctttacgtcgag
gatgcggaaggcatcctcgcctgcgtccagatgggaacgatcgagtttcacggctgggac
agccacgtcgacgcgctcgagacacccgatcgcatggtctttgacctcgatcccgatgag
gggctcggctttgccgaggtcaagaaggcggcggtcgaccttcgccgccagctcgccgac
atcggccttgtcagcttcgccatgctctcgggcggaaagggcatccacgtcgtggtgccg
ctcgagcctgggcatagctgggagaagcacaaggatttctcgaagcgtttcgccgaagcg
ctgagcctcgccgagcccgatcgctatgtcgccacgatgagcaaggcaaagcgcaaggga
aagatcttcatcgattatctgcgcaaccagcgcggcagcactgcgatcatgccctactcg
gcgcgcgcgcgcgaaggcgcgcccgtcgccgccccgatcgggtgggacgcgcttgcgggc
atcgaaagcccggcccgctggaccatcggcgacgccgaggagcttctgacccgcgccgcg
agcgccgagctcaagggctggggctttgcccagcagaagctgcccgatttctga

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