Uncultured Sphingopyxis sp. UC10: SPPYR_2878
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Entry
SPPYR_2878 CDS
T05531
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPPYR_2878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphu03019
]
SPPYR_2878
03009 Ribosome biogenesis [BR:
sphu03009
]
SPPYR_2878
Enzymes [BR:
sphu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPPYR_2878
Messenger RNA biogenesis [BR:
sphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPPYR_2878
Ribosome biogenesis [BR:
sphu03009
]
Prokaryotic type
rRNA helicases
SPPYR_2878
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
SBV33998
UniProt:
A0A1Y5PVH4
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All DBs
Position
SPPYR:3012630..3014462
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AA seq
610 aa
AA seq
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MAVQDKKNKMAFENLSPVLADALTTRGYEALTPVQTQVTEDEAKGRDLLVSAQTGSGKTV
AFGLAMADELLEDGRLPFATAPLALIVAPTRELALQVSRELGWLYAKAGARIATCVGGMD
ASRERRNLNQGVHIVVGTPGRLRDHLERGALDLEALRVAVLDEADEMLDMGFREDLEEIL
DATPAARRTLLFSATIPKPIAQLAKRYQRDALRISTVGEDRGHGDIAYQAVTVAPADIEG
AVINLLRLHEPDTAMLFCATRDNVRRLHARLVNRGFAAVALSGEHSQNERNHALQALRDR
RARVCVATDVAARGIDLPSLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRR
RRVDGMLRGARINAEWMDAPTAADVRQRDQERLIEKLLAPVEHEAEDLELAQRLMAERSA
EDIAASLVRAHRALMPPPEDLLDTGPRPRGERPERGDRFERERGDRPERGERREQFDDSA
WFRLNIGRRQNADPRWILPLLCRRGHVTKNEIGAIRIGPSETLFNIPLAIADRFAEAVQR
TANQDGEDDSGVSITPAPDGPTYPPRREKGGHKGGPRHDGPRKPFGAGGKPGGYKAKPFG
KGKPRHGGKQ
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggccgtacaggacaagaagaataaaatggctttcgaaaatctttcccccgtccttgcg
gacgccctcaccacgcgcggctatgaagcccttacacccgtgcagacacaggtcaccgaa
gacgaggccaagggccgcgacctgctcgtttcggcgcagaccggttcgggcaagaccgtc
gccttcggcctcgcgatggcggacgaactgctcgaagacggccgcttgcccttcgcgacc
gcgccgctcgcgctgatcgtcgcgccgacgcgcgaactggcgttgcaggtcagccgcgag
ctcggctggctctatgccaaggccggcgcgcgcatcgcgacctgcgtcggcggcatggac
gcgagccgcgagcgccgcaacctcaatcagggcgtccatatcgtcgtcggcacgccgggc
cgcctgcgcgaccatctcgagcgcggcgcgctcgacctcgaggcgctgcgcgtcgcggtg
ctcgacgaggccgacgaaatgctcgacatggggttccgcgaggacctggaggaaatcctc
gacgcgacccccgcggcgcggcgcaccctgctcttctcggcgacgatcccgaaaccgatc
gcccagctcgccaaacgctaccagcgcgatgcactccgcatttcgactgtcggcgaggat
cgcggccatggcgacatcgcctatcaggccgtgaccgtcgcccccgccgacatcgagggc
gcggtgatcaacctgctgcggctgcacgaacccgacacggcgatgctgttctgcgcgacg
cgcgacaatgtccgccgccttcacgcccggctggtcaaccgcggctttgccgccgtcgct
ctctcgggcgagcatagccagaacgaacgcaaccatgcgctgcaagcccttcgcgaccgc
agggcaagggtgtgcgtcgcgactgacgtcgccgcgcgcggcatcgacttgccgagcctc
agcctcgtcatccacgtcgaaatcccgcgcgatgccgaaacgctccagcaccgctcgggc
cgcaccggccgcgcgggcaagaagggcaccgccgtcctcatcgtcccctatccgcgccgc
cgccgcgtcgacggcatgctgcgcggtgcgcgcatcaacgccgaatggatggacgcgccc
accgccgccgatgtccggcaaagggatcaggaacggctgatcgaaaagctgcttgccccg
gtcgagcatgaggccgaggatctggaactcgcgcagcggctgatggccgaacgcagcgcc
gaagacatcgccgcatcgctcgtccgcgcgcaccgcgcgctgatgccgccgcccgaggat
ctgctcgacaccggtccgcgcccgcgcggcgagcgccccgaacgcggcgaccgtttcgag
cgcgagcgcggcgaccgcccggaacgcggcgagcgccgcgaacagttcgacgacagcgcc
tggttccgcctcaacatcggccgccgccagaatgccgacccgcgctggatcctgcctttg
ctctgccgccgcggccatgtgacgaagaacgagatcggtgcgatccgtatcggcccctcc
gaaaccctcttcaacatcccgctcgccatcgccgaccgcttcgccgaagccgtgcagcgc
accgccaatcaggatggcgaggacgacagcggcgtttcgatcaccccggcgcccgacggt
cccacttatccgccacgccgcgaaaagggcgggcacaagggcggcccgcgccacgacggc
ccgcgcaagcccttcggcgcgggcggcaagcccggcggctacaaggccaaacccttcggc
aagggcaagccgcgccacggcggcaagcaataa
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