Sphingopyxis sp. PAMC25046: E5675_14420
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Entry
E5675_14420 CDS
T06315
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx03030
DNA replication
sphx03410
Base excision repair
sphx03420
Nucleotide excision repair
sphx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5675_14420 (polA)
03410 Base excision repair
E5675_14420 (polA)
03420 Nucleotide excision repair
E5675_14420 (polA)
03440 Homologous recombination
E5675_14420 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphx03032
]
E5675_14420 (polA)
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_14420 (polA)
Enzymes [BR:
sphx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E5675_14420 (polA)
DNA replication proteins [BR:
sphx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E5675_14420 (polA)
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
E5675_14420 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E5675_14420 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QCB55504
UniProt:
A0A4P7RYY0
LinkDB
All DBs
Position
3053015..3055825
Genome browser
AA seq
936 aa
AA seq
DB search
MSEKNHLYLVDGSSYIFRAYHRLPPLTNPKGVPVGAVYGYTTMLWKLAKDLHDADGPTHL
AVILDHSSQSFRNEIYDQYKANRPEPPEDLRPQFPLIRDATRAFSLPCIEMEGFEADDLI
ASYAEAAVREGWDVTIVSSDKDLMQLIREPAEGPQVDMLDTMKNVRMGLEAVNEKFGVTP
DLVGDVLALMGDSVDNVPGVRGIGPKTATKLIQEYGNLTAALDGATTMKASKLRDNLIEH
RAMAELSRILVDLKRDCPLPDALDALKLGAIPPLPLKSFLDEHGFRSLSAKLDLGGTPGG
PPTLPRASAAPAASAAGPSTPTLPPMPAIDRALYETVTTIEALDRWIEEARAAHVVAIDT
ETASLDSVTGTLVGVSMATGPGRACYIPLGHGGTDMFAEKPEQVPLADAIGRLHALFSDE
AVLKVGHNLKYDIGVLAQHGITIAPYDDTLVMSFALDAGKHQHGLDELAKLHLDHVCISF
KDVCGTGKSQISFAEVPLDRATQYAAEDAEVAWRLWKLLKLRLPIEGGTRVYEMVDRPLA
AVVEGMERAGIMVDRDYLARLSGEFANDMLRMEGEIHGLAGQPFAIGSPKQLGEILFDKM
GLKGGRKGKSGDWSTDQSELERLERDGVPIARKILEWRQLAKLKSTYTDALQQQINPTTG
RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTETGRQIRDAFIAAPGHVLIAADYSQIELRL
AAHMADVPELKTAFAQGQDIHAATAIELFGEVNRDTRGKAKTVNFSILYGISRWGLAGRL
EVTPDEAQALIARYFERFPGISDYITDTLENARAKGYTETLFGRKTWFPRIKAANQNERA
GSERAAINAPIQGTSADLIKRAMARMPNALADAGLSDVRMLLQVHDELVFEAPEDKAAAA
GDVIRAVMSGAAEPALELSVPLEVEVGTGKSWGEAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagaagaatcatctctatctggtcgatggctccagctacatcttccgcgcctat
caccgcctgccgccgctgacgaaccccaagggcgtgcccgtcggcgcggtctatggctat
acgacgatgctgtggaagctcgcgaaggatctgcacgacgccgacgggccgacgcacctc
gccgtcatcctcgatcattcgagccagtcgttccgcaacgagatttacgaccaatataag
gcgaaccgccccgagccgcccgaggatctgcgcccgcaattcccgctgatccgcgacgcg
acgcgcgccttctcgctgccgtgcattgagatggagggtttcgaggccgacgacctcatc
gcctcttatgccgaagccgcggtgcgcgagggctgggacgttacgatcgtgtcgtcggac
aaggatttgatgcagctgatccgcgaacccgccgaaggcccgcaggtcgacatgctcgac
acgatgaagaatgtccggatgggtttggaagcggtgaacgagaagttcggcgtcaccccc
gatctggtcggcgacgtgcttgcgctgatgggcgacagcgtcgacaatgttcccggcgta
cgcggcatcggcccgaagaccgcgaccaagctgatccaggaatatggcaatctgaccgcc
gcgctcgacggggcgacgacgatgaaggcgtcgaagctgcgcgacaatctgatcgagcat
cgcgcaatggccgaattgtcgcgtatcctcgtcgacctcaagcgcgattgcccgctgccc
gacgcgctcgacgcattgaagctcggcgcgatcccgccgctgccgctgaaaagcttcctc
gacgagcatggtttccgttcgctttcggccaagctcgacctcggcggcacgccgggcgga
ccgccgaccctgccgcgcgcgagcgcagcgccggcggcatccgcagcgggcccatcgacc
cctaccctgcccccgatgcccgccatcgaccgcgccctctatgaaacggtaacgacgatc
gaggcgctcgaccgctggatcgaggaagcgcgcgccgcgcatgtcgtcgcgatcgacacc
gaaacggcgagcctcgacagcgtcaccggcacgctcgtcggcgtcagtatggcgaccggc
ccggggcgcgcctgctacatcccgctcggccatggcggaaccgacatgttcgccgaaaag
cccgagcaggtaccgctcgccgacgcgatcggccggctgcatgcgcttttttcggatgaa
gcggtgctgaaggtcgggcacaacctcaaatatgacatcggcgtgctcgcgcagcacggc
atcaccatcgcgccttatgacgatacgctggtgatgagcttcgcgctcgacgcgggcaag
catcagcacgggctcgacgagctggcgaagctgcacctcgaccatgtctgcatctcgttc
aaggacgtgtgcggcacgggcaagtcgcagatcagcttcgccgaagtgccgctcgaccgc
gcgacgcaatatgcggccgaggatgccgaggtcgcgtggcggttgtggaagctgctcaag
ctccgcctgccgatcgagggcggcacgcgcgtctatgaaatggtcgaccgtccgctcgcc
gccgtcgtcgagggcatggagcgtgccggcatcatggtcgaccgcgactatctcgcgcgc
ctgtcgggcgagttcgcgaacgacatgctgcgcatggaaggcgagattcacggactcgcg
ggacagcccttcgcgattggcagccccaagcagctcggcgaaatattgttcgacaagatg
ggcctgaaaggcggacgcaagggaaagtcgggcgactggtcgaccgaccagagcgagctc
gaacggctcgaacgcgacggcgtaccgatcgcgcgcaaaatcctcgaatggcgccagctc
gcgaagctcaagtcgacctataccgacgcgctgcagcagcagatcaatccgacgaccggc
cgcgtccacaccagctacagcctcgtcggcgcgcagaccgggcggctgtcgtcgaccgac
cccaatctccagaacatcccgatccgcaccgagaccggccgccagatccgcgacgccttc
atcgcggcgcccggtcatgtcctgatcgccgccgattatagccagatcgagctgaggcta
gcggcgcatatggccgacgtccccgaactcaagaccgccttcgcgcaggggcaggacatc
cacgccgcgaccgcgatcgagctgttcggcgaggtcaaccgtgacacgcgcggcaaggca
aagacggtcaatttctcgatcctctacggcatttcgcgctggggcctcgcgggccggctc
gaagtgacgcccgacgaggcgcaggcgctgatcgcgcgctatttcgagcgtttccccggc
atttcggactatatcaccgacacgctcgagaatgcgcgcgccaagggttataccgaaact
ttgttcgggcggaaaacctggttcccgcgtattaaggccgcgaaccagaacgaacgcgca
ggcagcgaacgcgccgcgatcaacgcgccgatccagggtaccagcgccgacctgatcaaa
cgcgcgatggcacggatgccgaatgcgttagcggatgcggggctttccgacgtccgcatg
ctgctgcaggttcacgacgagctggtgttcgaagcacccgaggacaaggcggcggcggcg
ggcgacgtcatccgcgcggtgatgtcgggcgccgccgaaccggcgctcgagctgtcggtt
ccgctggaggtcgaggtcggcacggggaagagctggggcgaagcgcattga
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