Spiribacter curvatus: SPICUR_06225
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Entry
SPICUR_06225 CDS
T02888
Name
(GenBank) RNA polymerase sigma factor AlgU
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
spiu
Spiribacter curvatus
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spiu03021
]
SPICUR_06225
Transcription machinery [BR:
spiu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPICUR_06225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
DinB_2
HTH_20
Phage_antitermQ
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AGY92213
UniProt:
U5T775
LinkDB
All DBs
Position
complement(1243904..1244491)
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AA seq
195 aa
AA seq
DB search
MSTANADKELVERVQAGDKKAFDLLVLKYQHKLVKLISRYVHDHAEALDVSQEAFIKAYR
ALPRFRGDSSFYTWLYRIGINTAKNYLVSQGRRPPDSDIDAQDAERYDIESRLKDQESPE
SLAQRDQVQETVVSAIEDLPDDLRTAITLREFEGLTYEEIAEAMDCPIGTVRSRIFRARE
SIDKRLRPLVSGTDG
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgctaatgcggacaaggagttggtagagcgtgttcaggcgggcgataagaaa
gcctttgacctgctggtcctcaaataccagcacaagctcgtcaagctcatatcccgctat
gtacacgatcacgccgaagcactggacgtctcccaggaggcgttcatcaaggcgtatcgg
gccttgccccgttttcgtggcgacagcagcttctacacatggctctatcgaatcgggatc
aataccgccaagaactacctggtctcgcagggcaggcggcctcccgatagcgatatcgat
gcccaggacgctgaacgatatgacatcgagtcgcgtctgaaggatcaggagtcgccggaa
tcgctggcgcaacgtgatcaggtacaggagacggtggtgagcgcgattgaggatctgccg
gatgacctgcgcaccgcgatcacgctgcgcgagtttgagggactcacctatgaggagatt
gctgaggcgatggactgcccgataggaaccgtacgctcgcggatattccgtgcccgcgag
tcaattgacaagcggctacgtccgctcgtatccggcacagatgggtga
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