Sphingomonas sp. LK11: AV944_04690
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Entry
AV944_04690 CDS
T04954
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AV944_04690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_04690
Enzymes [BR:
splk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AV944_04690
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AV944_04690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
APX65258
LinkDB
All DBs
Position
complement(980523..982973)
Genome browser
AA seq
816 aa
AA seq
DB search
MADPLERYNAKRDFTRTAEPAGTLAPGQGNSFIVQKHDATRLHWDFRLEVDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYATFEGTIPAGEYGGGTVMLWDRGTWSPVAGKSAKDLE
DGHLHFILDGERMKGEWLLVRMKPRGKEKRENWLLRKVADAQAGGTDTLTDQALTSVSTG
RTMAQIAEGKAAKPKSAKAAKARPGSAKAKAEAKAGTMPEFQPPALCTLVDQVPAGNGWL
HEIKYDGYRALIAVGGGEARVFTRSGLDWSEKFPGIVAAAADLPVTSALIDGEIVAFEDG
RPDFSTLKDAIGTAKPMSLFAFDLLSLDGEDVTGLPLVQRKERLRGIVPKGDGTIQFAEH
VTGSGEALFDKLCAEGLEGVVSKRADSRYPNARSRDWLKIKCLKRQEFVIVGWLPSDKAR
RGLKSLLLGVNRDGKLAYVGKVGTGFTQDRMAELRTLLDARPRKTAPVEAPRAMVRGAKW
VRPDLVAEIAFTETTPDGLLRHPSFIGLREDKPADQVVEERPAPAPSAEESDIAITHPER
VIFPDGDLTKGNLADYVAAVAPLMLPWVARRPVSLVRCPQGRARACFFQKHDAGSFGPHV
HSVPIQEKDGGTEPYLYIEDAEGLRACIQMGSIEFHGWGSSIATLEQPDRMIFDLDPDPS
VTFDDVKRAAVHIHDQLAELGLTSFAMLSGGKGVHVVVPLTPNAEWPAVSDFAERFAKAL
AESDPDRFVAVATKARRKGRIFIDWLRNQRGATAVMPYSARARSGAPVAAPVAWRELDGI
DTAARWTIRDAGELATRAGSAALRGWGVADQILPDL
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccgctcgaacgctataacgccaagcgcgacttcacccgcaccgccgaaccg
gcggggacgctggcgccgggccagggcaacagcttcatcgtgcagaagcatgacgcgacc
cggctccactgggacttccggctggaggtggacggggtgctcaaaagctgggcggtcacg
cgcgggccgagcctggaccctgacgaaaagcggctggcggtacggaccgaggatcatccg
ctatcctatgcgacgttcgaggggaccatcccggcgggcgaatatggcggcggcacggtg
atgctgtgggatcgcggcacctggtcgccggtcgcgggcaagagcgcgaaggatctggag
gacgggcatctccacttcatcctcgatggcgagcggatgaagggcgaatggctgctcgtc
cgcatgaagccacggggcaaggagaagcgcgagaactggctgctgcgcaaggttgccgac
gcccaggccgggggcaccgacacgctgaccgatcaggcgctgaccagcgtgtcgaccgga
cggactatggcgcagatcgccgaagggaaagcggcgaagccaaagtccgccaaggcagcg
aaggcgcggccgggcagtgcgaaagcgaaggccgaggcgaaagcgggcacgatgcccgaa
tttcagcccccggcgctctgcactttggtcgatcaggtccccgccggaaatggctggctg
catgagatcaaatatgacggctaccgcgcgctgatcgcggtcggcgggggcgaggcgcgg
gtcttcacccgcagcgggctggactggagcgagaaattccccggcatcgtggcggccgcc
gccgacctgcccgtcaccagcgcgctgatcgacggagagatcgtcgcgttcgaggacggc
cgtcccgacttctcgacgctgaaggatgcgatcggcacggccaagccgatgagcctgttc
gccttcgacctcctctcactggacggcgaggatgtgaccggcctgccgctggtccagcgc
aaggaacggttgcgcggcatcgtgcccaagggcgacgggacgatccagttcgccgaacac
gtcaccggctcgggcgaggcgctgttcgacaaactgtgtgccgaggggctggaaggcgtc
gtctccaaacgcgccgacagccgctatcccaatgcgcgcagccgcgactggctgaagatc
aaatgcctgaagcggcaggagttcgtgatcgtcggctggctgccgtccgacaaggcgcgg
cgggggttgaagtcgctgctgctgggggtgaaccgcgacggcaagctggcctatgtcggc
aaggtcggcaccggctttacgcaagaccgcatggccgagttgcgcaccttgctcgacgcc
cgcccccgcaagaccgcccccgtcgaggcgccgcgcgcgatggtacgcggcgcgaaatgg
gtgcgccccgatctggtcgccgagatcgcctttaccgagacgacgcccgacggcctgctc
cgccaccccagcttcatcggccttcgcgaggacaagcctgccgatcaggtggtcgaggaa
cgccccgcccccgcgccttcggccgaggagagcgatatcgccatcacccatcccgaacgg
gtgatctttcccgacggcgacctgaccaagggcaatctcgccgattatgtcgcggcggtc
gccccgctgatgctgccctgggtcgcgcgccgaccggtcagcctggtccgctgtccgcag
gggcgggcgcgggcatgcttcttccagaagcatgacgcgggcagtttcggaccgcatgtc
cattcggtgccgatccaggaaaaggacggcggcaccgaaccctatctctatatcgaggat
gcggagggcctgcgcgcctgtatccagatgggctcgatcgagtttcacggctggggctcc
tccatcgccacgctggaacagcccgaccggatgatcttcgacctcgaccccgacccgtcc
gtgaccttcgacgatgtgaaacgcgccgccgtgcatatccatgaccagctcgccgaactg
ggcctgaccagctttgccatgctgtcgggcggcaaaggggtgcatgtcgtcgtaccgctg
accccgaacgccgaatggcccgccgtgtcggatttcgccgaacgcttcgccaaggcactg
gcagagagcgatcccgaccgcttcgtcgcggtggcgaccaaggccaggcgcaagggccga
atcttcatcgactggctgcgcaaccagcgcggggcgaccgccgtcatgccctattcggcg
cgggcgagatcgggcgcgccggtcgcggccccggtggcgtggcgcgagctggacggcatc
gatacggcggcgcgctggacgatccgcgatgccggggaactggcgacgcgcgcgggcagc
gcggcgttgcgcggctggggtgtggcggatcaaatcctgcccgatctctaa
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