Sphingobium sp. MI1205: K663_11060
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Entry
K663_11060 CDS
T04383
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K663_11060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spmi03400
]
K663_11060
Enzymes [BR:
spmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K663_11060
DNA repair and recombination proteins [BR:
spmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K663_11060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF2742
Motif
Other DBs
NCBI-ProteinID:
AMK18592
UniProt:
A0A126R958
LinkDB
All DBs
Position
1:complement(2295871..2298363)
Genome browser
AA seq
830 aa
AA seq
DB search
MAQADLLKEYNRKRDFARTKEPAGKRGRTRGNSFIVQKHDATRLHYDFRLELDGVLKSWA
VTRGPSLDPADKRLAVRTEDHPLSYASFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSAND
LAKGHLHFILHGERMKGEWLLIRLKPRAGEGKRENWLLRKIDDVHAGAAEDLVGRELTSI
RSGRTMSEIAADAPAISLKGKRGKAFDDAMAKAQKMTPARATIKGRSGKPPPFQSPQLAT
LVDAVPTGSHWLHEIKYDGYRSLLSVAGSRVKVFTRTGLDWTDRFASLAREVASLRLPPA
LIDGEIVALGPDGNPDFSTLQQVLKGEGKGELHLFAFDLLSLDGEDLAWLPNIARKEKLA
ALLGQGSDHVHFSDHIVGPGEKLFRAMCEAGQEGIISKRADAPYRGGRTRNWLKVKCTRR
QEFVIVGWTPSSASGRSLRNILLAQNGEEGLVYAGKVGTGFNARNSEALLRQLKKLSRKS
PPLTVPRTEARNVQWVRPDLVAEIAFAEFTSDNVVRHGSFLGLREDKQARDVTREQAMTT
PQGDRDVQVSNRDRLIFPEAKVTKGQLADYYEAAGAIMLPWIAHRPISLVRCPQGRAKKC
FFQKHDSGSFGDHVKHVAIREKDGDEQDYLYVDDIDGLIACVQMGTIEFHGWGSRVEDVE
KPDRLIFDLDPDEGLDFEDVKKAARDIRHTLEDIGLVSFAMLSGGKGVHVVVPLTPEAEW
PKVKDFADRFARALASTEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARENA
PVAAPVSWTELNDIDRAAAFTIADVGQLLDRAGSRELRGWGEARQTLPDF
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggcccaagccgatcttctgaaggaatataatcgcaaacgggatttcgcccggacgaag
gagcctgccggcaagcggggccgcacccgcggcaacagctttatcgttcaaaagcatgac
gccacgcggctgcattatgattttcgcctcgaactggatggcgtgctgaaaagctgggcg
gtgacgcgcgggccaagccttgatccggccgacaagaggctggcggtccgcacggaggat
catcccctgtcctacgccagcttcgaaggaacgatccctaaaggcgaatatggtggcggc
acggtgatgctgtgggatgagggaacatgggaacctgttcccggcaagagcgccaatgat
ctggccaaggggcatctgcacttcattcttcatggcgaacggatgaagggtgaatggctt
ctcatccgcctgaagccccgcgcgggtgaagggaagcgcgaaaactggctgcttcgcaag
atcgatgacgtccatgctggcgctgccgaggatctggtaggccgcgaactgacgagcatc
aggagtggccggacgatgagcgagatcgctgccgatgcccccgccatttccctgaagggc
aagcgcgggaaagcgttcgacgatgccatggcaaaggcgcaaaagatgacgcccgcgcgc
gctacaatcaaagggcggagcggaaagccgccgccgttccagtccccgcaactggcgacg
ctggtcgatgctgttccgacaggcagccactggttgcacgagatcaaatatgacggctat
cgcagtttgctgagcgttgcgggaagccgcgtaaaggtttttactcgcacgggtctcgat
tggacggaccgctttgcgtcgctcgctcgggaggtggcgagcctgaggttgccgcctgct
ctgatcgacggggagatcgtcgcgctgggaccggatggaaaccccgacttttccaccttg
cagcaggtcctgaagggcgaaggcaagggcgagcttcacttgtttgcttttgaccttcta
tcgctggatggggaggatctggcatggctgcccaatatcgcgcggaaggaaaagctggcg
gcgctgctggggcaaggcagcgaccatgtgcatttttccgaccatattgtcggccccggt
gaaaagctgttccgcgccatgtgcgaggcggggcaggaggggataatatcaaagcgtgcc
gatgctccctatcgtggggggcggaccaggaactggttgaaagtcaaatgcacgcggcgg
caggaattcgtcattgttgggtggacgccaagttccgccagtggccgctcgcttcgcaat
atcctgctcgcgcagaacggcgaggagggtcttgtctacgcagggaaagtaggaaccggc
ttcaacgctcgaaacagtgaggctttgcttcggcagttgaagaagttgagccgcaaatcc
ccgcctttgacggtgccgcgcaccgaagcgcgaaatgtgcagtgggtgcggcctgacctg
gtagccgaaatcgcctttgccgaatttaccagcgacaatgtcgtgcgtcacggcagcttc
cttggcctgcgcgaagacaagcaggcgcgtgacgtcacgagggagcaagcaatgacgaca
ccccaaggtgacagagatgtccaagtgtccaaccgggaccggctgatttttccggaagcg
aaggtgaccaagggtcagcttgccgattattatgaagcggctggcgcgatcatgctgcca
tggattgctcatcgaccgataagccttgttcgctgtccccagggcagggcgaagaaatgc
ttcttccaaaagcatgacagcggaagctttggcgatcatgtgaagcatgtcgccattcgt
gaaaaggacggcgatgaacaggattatctctatgtcgatgatatcgacggccttatcgcc
tgcgttcagatggggacgatcgaattccatggatggggatcgcgggtggaggatgtggag
aagccggaccggttgatctttgatcttgacccggatgagggtttggactttgaagatgtg
aagaaggctgcccgcgacattcgtcatacgttggaggatatcggcctggtcagctttgcc
atgttatcaggcgggaagggcgtgcatgtcgttgtgccgctgaccccggaagcggaatgg
cccaaagtaaaggatttcgcggaccggttcgccagagcgcttgcttcaacagagcctgat
cgcttcaccgcgacgatgagcaaggccaagcgcaaggggcgtatttttatcgactggtta
cgcaaccagcgcggggccaccgccgtgttgccctatgtcgtgcgcgcgcgtgaaaatgcc
ccggtggcggcgcctgtcagttggaccgaactgaatgatatcgatcgcgctgctgccttc
accatagcggatgttggccagttgctcgaccgggctggatcacgggaattgcggggatgg
ggcgaagcgcgccaaacactccccgacttttga
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