Schizosaccharomyces pombe (fission yeast): SPBC18H10.06c
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Entry
SPBC18H10.06c CDS
T00076
Symbol
swd2
Name
(RefSeq) Set1C complex subunit Swd2.1
KO
K14962
COMPASS component SWD2
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SPBC18H10.06c (swd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
SPBC18H10.06c (swd2)
03036 Chromosome and associated proteins [BR:
spo03036
]
SPBC18H10.06c (swd2)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SPBC18H10.06c (swd2)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
SPBC18H10.06c (swd2)
COMPASS/SET1 complex (yeast)
SPBC18H10.06c (swd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
SGL
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
2540788
NCBI-ProteinID:
NP_595730
PomBase:
SPBC18H10.06c
Ensembl:
SPBC18H10.06c
UniProt:
O60137
LinkDB
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Position
II:complement(1781945..1783260)
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AA seq
357 aa
AA seq
DB search
MTTVSITFDLLSSMQPRKWLKNQNFVGEITSLSFDDSGELCLASCTDDTLQLYNCISGKF
VKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTVTSIDV
SPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLY
NIKSFDARPFQDIPLTFLPPHVRIANVEFSTDGKYLLLTTGNDFHYVIDAYSGSELLRVP
SKVSTKTQDGNLTYYASACMSPDSKFLFTSYDNEHLCMYQLPELKQTVNSDHIVNSFTEM
GLASTTPTSNSHSTENPLAIIPSSTSKNLLPETPSIVRFNPRFSQLVTAHSGVIFWT
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagtttcaattacttttgacttgttgtcgtctatgcaaccaagaaaatggctg
aaaaatcagaattttgttggtgaaattacctctctcagttttgacgacagtggagagttg
tgcttggcgtcgtgtactgatgatactttacaactgtataactgcatttctggaaaattt
gtgaaatcacttgcaagcaaaaagtacggagcacatttaggtcggtttactcatcattca
aattcattaatacatgcttccacaaaggaagacaataccgttcgttatttagacgttgtg
acaaatcggtatcttcgatattttcctggccataagcaaacagtgacttcaatcgatgta
tcaccagcagatgaaacttttttaagcgcttctttagataatactattcgcctttgggac
cttcggtctccaaattgccagggtttgctcaatgttagttcacccgttgttgcagctttt
gatgctacaggactaatctttgcctcagttagtgaaagaaaatacaaaatttctctttat
aacattaaatcatttgatgctcgcccatttcaagacattcctttaacattcctgccccct
catgtccgcattgcaaatgtggaattcagtactgatggtaaatatctattgctaacaact
ggaaatgattttcattacgttatagacgcttatagtggaagtgaattattaagagttcct
tcaaaggttagcacaaaaacccaagatggaaatttgacttattatgcttcagcttgcatg
tctccagatagtaaatttctttttacttcatatgataatgagcatctttgcatgtatcaa
ctaccagaactgaaacaaactgttaactcggatcacattgttaattcattcaccgaaatg
ggcctagcatcaactactccgaccagcaatagtcattcaacagagaacccgctagctatc
attccttcttcaacatctaaaaaccttttaccagaaacaccttctattgttcgctttaat
ccacgcttctctcaattagttacagcacattctggagtaattttctggacgtaa
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