Schizosaccharomyces pombe (fission yeast): SPCC16C4.06c
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Entry
SPCC16C4.06c CDS
T00076
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spo03016
]
SPCC16C4.06c
Enzymes [BR:
spo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
SPCC16C4.06c
Transfer RNA biogenesis [BR:
spo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SPCC16C4.06c
Prokaryotic type
SPCC16C4.06c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
2539359
NCBI-ProteinID:
NP_001342755
PomBase:
SPCC16C4.06c
Ensembl:
SPCC16C4.06c
LinkDB
All DBs
Position
III:complement(668412..671378)
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AA seq
413 aa
AA seq
DB search
MHSLLRPSRFSANQSVLCLLQRHRVFFSSISVKPRKRMVYCVVSYRGTGFAGLQYNANVK
TIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVHAIVNVLGLKVLDNQPLPHVV
NLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVYEYWLPVSSLLTPRPCTLEAYVIAKAS
EKAFPINETLSHLANLSKQDCVANSLSEPFRLSKPKLDFLKHACTMFRGTHRFHSYTTEK
GFSDASSRRFLLDVRVDNLHIDKLNRQWVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNA
QVLLNTFNNSYRIRIPRAPAEFLLLNQPIFQAFNKKCSRFDHEPVEWSCAQKGIDQFAHS
FLRTPMFDCFISSESFQSFFILQKQFQLFQDLALLTSFDFLEPSSRRDILGEK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgcatagtctcttaagaccttcaaggttctctgccaaccaatctgtgctttgcttgctc
caacgacatcgggttttcttttcttcgatttcggtgaaaccccggaaacgaatggtctac
tgtgttgtcagctatcgtggtactggctttgctggtttgcagtacaatgccaatgtcaaa
accatacaagatacactgttccaagcattcgctcgagtaggcgccgttgttcaggtgaat
gctgactctcccaagaagatccgaatgtgttctgctgctagaacagacaagggtgtacat
gccattgttaatgttcttggtttgaaagtgttggacaatcaacctctacctcatgtggtg
aatttggtcaacgatattttaccaccttgtattcgtgtatggaaaatggcgaggacgttt
aattcgttttctccacacactgtgtgcgacagtcgcgtatatgagtattggttgcctgtc
tcctctctacttactccccgtccttgcactctcgaggcctatgtaattgccaaggcatct
gaaaaagcattccccattaatgaaacactttcccatttagctaacttaagcaaacaagac
tgtgttgcgaattccttgtccgagccctttcgtttatccaaacctaaactcgactttcta
aagcatgcgtgtacgatgtttcggggcacccatcgatttcacagttatacaacggagaag
ggtttttcggacgccagttctcgaaggtttttattagatgtgcgtgtggataaccttcac
attgacaagttaaatcgccaatgggttaagctaatctttcacggccagtcgtttatgaag
catcaaattcgcaaaatggttggcatccttattcatcttacacgcactggatggaatgcg
caagttttgctaaatacatttaataattcgtatcgcattcgaatacctagagcgcctgct
gagtttttacttctcaatcaacctatctttcaagctttcaacaaaaaatgttcccgattt
gatcatgaaccggttgaatggtcatgtgcgcaaaaaggcattgaccaatttgcacattct
tttcttcgaactccaatgtttgattgcttcatttcatcagaatcttttcaatcatttttc
atccttcaaaaacaatttcaattatttcaagacttagctttgttgacatcgtttgacttt
ttagagccctcgtctcgtcgtgatattcttggcgaaaaatag
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