Shewanella polaris: FH971_08340
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Entry
FH971_08340 CDS
T06579
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
spol
Shewanella polaris
Pathway
spol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FH971_08340 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spol03400
]
FH971_08340 (sbcB)
Enzymes [BR:
spol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
FH971_08340 (sbcB)
DNA repair and recombination proteins [BR:
spol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
FH971_08340 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FH971_08340 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FH971_08340 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
EF-hand_14
Motif
Other DBs
NCBI-ProteinID:
QDE30972
UniProt:
A0A4Y5YDZ2
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All DBs
Position
complement(1903923..1905338)
Genome browser
AA seq
471 aa
AA seq
DB search
MTNAIQPTLFWHDYETFGAIPSKDRPSQFAGIRTDLELNILGEPETFYCKLAPDYLPSPE
AILITGITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFID
PYAREWQNGNSRWDIIDLVRACYAFRPDGINWPLKEDGSPSFKLELLTQANGLSHEKAHD
AMSDVYATIAMAKLIKQKQPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGC
TTLIAPVAYHPTNKNAVICVNLAMDISPLLELSAQEISDRMYTSRQNLAENELAIPLKQI
HLNKCPFIGSPKLLDDEVAVKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKPIT
DPDLMLYSGGFFSHADKAKMDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPETLS
DNEARKWREFCQQRLSDPDYVIKLENLVEETSENEHKQKLLKALYQYLQSL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgcaattcaaccaacattattttggcacgattacgaaacatttggggcaatt
ccaagtaaagatcgtccatcacagtttgcgggtattcgaaccgatcttgaacttaatatt
ctcggcgaacctgaaaccttttattgcaaactcgcacccgactacttaccgtctcctgaa
gctattttaattaccggtattaccccgcaactggcgaatcttaaaggcgtgccagaggct
gagttcatgaaacgtatcaatacgttattcagccaacccaatacctgcgtagtcggctat
aactcattacgttttgatgatgaagtgagtcgttacggcttttaccgtaattttattgat
ccttacgctcgagaatggcaaaacggtaattcacgttgggatattatcgatttggttaga
gcttgttatgcatttcgtccagacgggattaattggccattaaaagaagatggttcaccc
agttttaaattggaattattgacccaagcgaatggtttaagtcatgaaaaagcccatgat
gcgatgtcagatgtatatgcaaccattgctatggctaaattgataaagcaaaaacaaccc
aaactatacgaatactatttcaatttaagacgtaaacaagcggttgcggaccatattgat
gtattaaaaatgcaacccttggttcatgtcagctcaaaaattagtgcattacaaggttgt
actacgttaatcgcgcctgttgcataccatccgactaataaaaacgcggttatttgcgtt
aatttggccatggatatctcgccattgttggaattgtcagctcaagaaataagcgaccgc
atgtacacgtctcgtcaaaacttagccgaaaacgaacttgctattccattaaaacaaatc
catctcaataaatgtccattcattggttcgccaaaattacttgacgacgaagtggctgta
aaattacagtttgataaagcatttgcgcgtgaacaatataaacgcttaaaaaaccatccc
gaattgcgtgaaaagcttaaccaagtgtttgaacttgaatcagatcgtaaacccattacg
gatccagatttaatgctttatagcgggggatttttcagccatgccgataaagctaaaatg
gatattatttgccacacggcaccacacaatttagcggcattagcattacaattcgatgat
ccgcggatcaatgaaatgttgtttcgtttccgggctcgtaactacccagaaacattaagc
gacaatgaggcacgcaaatggcgtgaattctgccaacaacgattatcagatcctgattat
gtgataaaactcgagaacttggtcgaagaaaccagcgagaatgaacataaacaaaagcta
ttaaaagccctatatcaatacttacagtcattatag
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