Sporosarcina sp. PTS2304: DV702_12235
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Entry
DV702_12235 CDS
T05572
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spos
Sporosarcina sp. PTS2304
Pathway
spos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DV702_12235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spos03021
]
DV702_12235 (rpoC)
03400 DNA repair and recombination proteins [BR:
spos03400
]
DV702_12235 (rpoC)
Enzymes [BR:
spos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DV702_12235 (rpoC)
Transcription machinery [BR:
spos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DV702_12235 (rpoC)
DNA repair and recombination proteins [BR:
spos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DV702_12235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXI00419
UniProt:
A0A345NZG0
LinkDB
All DBs
Position
complement(2540896..2544489)
Genome browser
AA seq
1197 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
TPRALEEIIYFASYVVVEPADTPLERKQLLSEKEYRLYREKYGSKFQAAMGAEAIEQLLR
AIDLDKETDSLKEELKTVQGQRRTRAIRRLEVVESFRNSGNRPEWMVLEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERNLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPMLVEGRAITLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTVERKDAAGEGSVFSDPNEALIAYQTGHVHLHSRIAIQ
AGSINNPTFTEEQNRQLLLTTVGKVIFNEILPESFPYINEPTLNNLQVETPAKYFVDGTV
NVKEHLKEAELITPFKKTILGEIIAEIFKRFHITETSKMLDRMKNLGFKYSTRAGITIGI
SDIVVLPNKADILNEAQEKVDKVTQQFRRGLITEEERYDRVISYWSTAKDVIQNKLMDSL
DNENPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEIAALTEGNEMIESLQ
ERIEGRHTKKTIKHPETGELILEKNGLITADVANAIIAAGFEKVTIRSAFTCNTKHGVCK
KCYGINLATGEAVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEISGTVVDIDEIREGQKEITIEGEVETRKYLAPYNGRLKVEEGDVIER
GQTLTEGSIDPKELIIVKDVATVQEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IEAGDTELLPGSLLDIHQFSEANNKVLLAGKAPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKTDELLGLKENVIIGKLVPAGTGMQRYRQIKMQHEQEEETITVD
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtatatgaaaattggcctagcttcaccagacaagatt
cgttcttggtcctatggagaagtgaagaaacctgaaactataaactaccgtacattgaaa
ccggagaaggacggattgttctgtgaaagaattttcggaccgacaaaggactgggaatgt
cactgtgggaagtataaacgggttcgttataaaggcgtcgtctgtgatcgctgtggcgta
gaagtaacacgtcaaaaagtgcgtcgtgaacgaatggggcatattgaacttgcagcgcca
gttacgcacatatggtatttcaaaggaattccgagccgtatgggattaattttggatatg
acaccgcgtgcattggaagaaattatttatttcgcatcttacgtagtggttgagccggca
gatacgccgcttgaacgaaaacaattgctttctgaaaaggaatatagactgtatcgtgaa
aagtacggttcgaaattccaagcggctatgggagcagaggctattgagcaacttttacgc
gcgatcgacctagataaagagacagactcattaaaagaagaattgaaaacagttcaaggt
caacgccgtacacgtgcaattagacgtttggaagttgtggaatcattcagaaactctggt
aatcgtccggagtggatggtgttggaagttcttccggtcattccgcctgaactgcgtccg
atggtacagttggatggtggacgtttcgctacttctgacttaaatgatttgtatcgtcgg
gtcattaaccggaataaccgtctaaagagacttttagatttaggggcacctggtattatc
gtacaaaacgagaagcgtatgttacaagaagcagtagatgcacttgtagataatggtcgt
cgtggaagacctgtaacgggtcctggtaatcgtccgttgaaatcactttctcatatgtta
aaaggaaagcaaggacgtttccgtcagaacttattaggaaaacgtgtagattattctggt
cgttcagtaatcgtagtaggtccgaatcttaaaatgtatcagtgtggtctgccgaaagag
atggctatcgagttattcaagccgtttgttatgaaagaattggtagaacgtaatttagca
cataacattaaaagtgcgaaacgtaaaattgaacgtttgcattctgaagtttgggatgta
ctagaagacgtgatcaaggagcatccggtactgcttaaccgagcaccgacacttcaccgt
ctaggaatccaggcgtttgaacctatgcttgtagaaggtcgcgcaatcacattgcaccca
cttgtttgtacagcttataacgctgactttgacggtgaccaaatggcggttcacgtacca
ctttctgctgaagcgcaagcagaggcacgtttattgatgctcgcagcacaaaacattttg
aatccgaaagacggtaaaccagttgtaactccttcacaggatatggttctcggaaattat
tatttaactgtagagcgtaaagacgcagcaggagaaggttcagtgttcagtgacccgaat
gaggcgttaattgcttatcaaaccggtcatgttcacttgcactctcgtattgcgattcaa
gcaggtagtattaataatccgacgtttacagaagaacagaacagacaactattacttact
acagtaggtaaagtgatcttcaatgaaatattgccagaatcgttcccgtacattaacgaa
ccgacactaaataacttacaggttgaaacacctgccaagtactttgttgacggaacagta
aatgttaaagaacatttaaaagaagcagagttgatcacaccgtttaaaaagacgatcctt
ggagaaatcattgcggaaatcttcaaacgtttccatattactgaaacatcgaaaatgttg
gatcgcatgaaaaatctaggatttaaatattcgacacgcgcaggtatcacaattgggatt
tctgacattgtagttttgccgaacaaagcagatattcttaatgaggctcaggaaaaagtg
gataaggttactcagcaattccgacgtggtttaattactgaagaagaacgctatgaccgt
gttatttcttactggagtacggcaaaagatgtcatccagaacaaattgatggactcacta
gataatgaaaaccctatttatatgatgagtgactccggagcacgtggtaacgcatctaac
tttacacaactcgcaggtatgcggggactgatggccaacccggctgggcgaatcatcgaa
cttccgattaaatcttcattccgtgaaggtctaacggtactcgaatactttatctctaca
cacggtgcgcgtaagggtctagccgatacggcactgaaaacagctgactcaggatactta
acacgtcgcctcgtagacgtagcacaagatgttatcgtacgcgaagacgattgtggaacg
gatcgtggtctagaaattgccgctctgacagaaggcaatgaaatgattgaatcattgcaa
gagcgtattgaaggtcggcatacgaagaagacgattaaacaccctgaaacaggcgaacta
attcttgaaaagaatggtttgatcactgcggatgtagcgaatgctattattgcggcaggt
ttcgaaaaagtaacaattcgttctgctttcacttgtaatacaaagcacggtgtatgtaaa
aaatgttacggtatcaacttagccacaggagaagcggtagaagtaggggaagcggtagga
attatcgcagctcaatctattggtgagcctggtacgcaacttaccatgcgtacattccac
acaggtggagttgcgggagatgatattacacagggtcttccacgtattcaagaaattttc
gagtcccgtaatccgaaagggcaggcggtaatttctgaaatctcaggaacagtcgttgac
atcgacgaaatccgggaaggtcaaaaagaaattacaattgaaggagaagtagagacacgc
aagtatttggctccgtacaatggtcgcttgaaagttgaagaaggcgatgtaattgagcgc
ggacagacactaacggaaggttctattgacccgaaagaattgatcatcgttaaagatgtg
gctactgtacaagaatatctcttaaaagaagtgcaaaaagtatatcgtatgcaaggtgtt
gagatcggggataagcacgttgaagtaatggttcgccaaatgcttcgtaaagtgcgtgtg
atcgaagcgggagatacagaactccttcctggttcattgcttgatatccaccaattctct
gaagcgaataataaagtgttgttagcagggaaagcgccggcaacttcacgtccagtgatt
ctcggtattacgaaagcatctcttgagacagaatcattcttatcagcagcatccttccaa
gaaacgacaagagtacttacagatgcagcgatcaaaggtaaaactgatgaattgcttggt
ttgaaggaaaatgtcattattggtaagttagtgcctgcaggtacaggaatgcaaaggtac
cgtcagattaaaatgcagcacgagcaagaagaagaaaccattacagtagattaa
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integrated database retrieval system
