Spiroplasma sp. NBRC 100390: S100390_v1c00100
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Entry
S100390_v1c00100 CDS
T05859
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
sprn
Spiroplasma sp. NBRC 100390
Pathway
sprn03030
DNA replication
sprn03430
Mismatch repair
sprn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sprn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
S100390_v1c00100 (holB)
03430 Mismatch repair
S100390_v1c00100 (holB)
03440 Homologous recombination
S100390_v1c00100 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprn03032
]
S100390_v1c00100 (holB)
03400 DNA repair and recombination proteins [BR:
sprn03400
]
S100390_v1c00100 (holB)
Enzymes [BR:
sprn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
S100390_v1c00100 (holB)
DNA replication proteins [BR:
sprn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
S100390_v1c00100 (holB)
DNA repair and recombination proteins [BR:
sprn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
S100390_v1c00100 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
IGPD
Motif
Other DBs
NCBI-ProteinID:
APE12823
UniProt:
A0A1J0TZ76
LinkDB
All DBs
Position
12610..13446
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AA seq
278 aa
AA seq
DB search
MNNLFSQSDAEKMALFKNLILKNNLSNQLLISCNNKIKLETFTTEIIKFLLCQEKKDSDC
QCETCQRINNKTYYDLKISGDFETTIKKETIQEIIQTFSYSALEQTGIKVYVINGADLLT
LEAANSLLKFLEEPSKNTYAFLLTTNKTKVIDTIKSRCLNVILENTADELDIDDFKTKFI
QTFFKNFASTPENNFIHIRQLNGYDHLESRQLFLEIANILKRKEWSKYEIIDQTLIKKLN
DKNTKLIEISYTIANLLLENLNKELVLEKGLIDLYNEV
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttattttcgcaaagtgatgcagagaaaatggcattatttaaaaatttaatt
ttaaaaaataatttatcaaatcaacttttaatttcttgtaataataaaattaagttagaa
acttttacaactgaaatcattaagtttttattatgtcaagagaaaaaagattctgattgt
caatgtgaaacttgtcaacgtatcaataataaaacctattatgatttaaaaattagtggc
gattttgaaacaacaattaaaaaagagacgattcaagaaatcattcaaacttttagttat
tcagcattagaacaaactggaattaaagtatatgttattaatggtgcagatttattaaca
ttagaagctgctaattcattattgaaatttttagaagagcctagtaaaaatacatatgct
tttttattaacaacaaataaaacaaaagtcattgatacaatcaaatcacgttgcttaaat
gttattttagaaaacacagctgatgaattagatattgatgactttaaaacaaagtttatt
caaactttctttaaaaattttgcaagcacaccagaaaataattttattcatattcgtcaa
ttaaatggttatgatcatttagagtctcgtcaactttttttagagattgctaatatttta
aaaagaaaagaatgaagtaaatatgaaattatagatcaaactttaattaaaaaattaaat
gataaaaatactaaattaattgaaatttcttatacgattgctaatttattgttagagaat
ttaaataaagagttagttttagaaaaaggattgattgatttatataacgaggtgtaa
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