Shewanella psychropiezotolerans: FM037_16780
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Entry
FM037_16780 CDS
T07745
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM037_16780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsh03019
]
FM037_16780
03009 Ribosome biogenesis [BR:
spsh03009
]
FM037_16780
Enzymes [BR:
spsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FM037_16780
Messenger RNA biogenesis [BR:
spsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FM037_16780
Ribosome biogenesis [BR:
spsh03009
]
Prokaryotic type
rRNA processing factors
FM037_16780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDO84559
LinkDB
All DBs
Position
3769039..3772449
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AA seq
1136 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSELDVPNGMGLIVRTAGVGKDSAEL
AWDLKVLEHHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEA
KQHVALVRPDFADRIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHLDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMSTP
DYRVSRHRKDDQISEASYKLLEQPVSNLYEPRKLERAATPEPAIKGFTAPVKAPEPKAKA
ATAPKATEEPGLIAKFFTAIGGLFKAEPKAEEPKKQSESPSQNRNNRRPARKNDSRRNDS
RRNRDDKEQSGDKNERTSRHSRNKRADSNEERSSRDKGDQGEQGKRQSRHDSKPTRTRQQ
ADVTDTTDAADAADATPKQEVARERRQRRNMRRKVRIETEKSQQLDEQHTEAVSAEVVVE
TAPISVKEDKQARPKRQPRKAKPKTDIKAKDDVQVTKAAENTTAEVETTTPETQQDDKLD
TVSQDSVTVETSSVEASATETSAVEVEANADATDDKPREGQRRSRRSPRHLRAAGQRRRR
DEDDGETNADATPAFIPNETEVEFQANQAAVSAASAQSTTEAPVTAPTKPVAPVQAEAPV
HVEAKAEAQSAPAAPIKPVAPVQAETPVKVEVKAEAQSASAAPTKPAAPVQAETQVKVEV
KAEAQSASAVPTKPAAPVKAETPVEVEVKAEAQSASAVPTKPAAPVKVEVKVEALAASAP
TKPEAPVQAVAKPEVNTVTAAAARPATPVKVETQQIAPEATAEVKAKVETPVKTLAKPRG
ASRFGTMVSSDMIAPVVETRENVDVPKGRQYEASESSPADAKPKTANSANSDMARP
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcgactcaatctgaagagttgcgcgtagccctagttgat
gggcaacagctatatgatctagatattgaaagtccaggtcacgagcaaaagaaagctaat
atctacaagggtaaaatcacccgtgtagagccctctctcgaagcggcatttgtcgattat
ggagcagaccgtcatggattcctgcccctcaaagagatcgccagagaatacttccctaaa
ggttactctttccaaggtcgccccaatattaaagaggtgattaaagagggccaagaggtc
atagttcaaattgataaagaggagcgtggcaataaaggcgccgcactcacgacttttatc
agtttagcgggttcataccttgtcttaatgccaaataaccctcgcgccggtggcatctct
cgccgtatcgaaggtgatgaacgcactgagctaaaggcggccttgtctgaattagacgtg
cctaatggcatgggcttaattgtacgcacagccggtgttggtaaagactctgcagaactt
gcatgggatctaaaagtacttgagcatcattggactgcgattaaagaagcgtctgttggt
cgccccgcgcctttcctcattcaccaagaaagtaacgtcatcgttcgtgctattcgtgac
tatttacgtcgtgatgtgggtgaagtacttatcgatcatcctcgcatcttcgaagaagca
aaacagcatgttgctttggtacgccccgattttgcagacagaatcaaacactatgatgca
gaagtgcctctgttcactcatttccagattgagacacagatcgaatcggcattccaacgt
gaagtgcgtttaccctctggcggatcgattgttatcgaccccactgaggcattaacatca
atcgatatcaactcagcccgcgccactaagggcagcgatatcgaagagactgcgttaaac
accaacctggaagctgcagatgaaattgcccgtcaattacgtcttcgcgacttgggcgga
ctcgtggttattgacttcatcgacatgactcccgtacgtcatcagcgtgaagtagagaac
agaatgcgtgatgctgttcacttagatagagcccgtgttcaactcggacgcatctctcgc
ttcggtctgatggaaatgtcacgacaacgccttagaccctctctggaagagtctgctgca
catctatgtcctcgttgtcacggccaaggcaccattcgtggcactgagtcattagcactg
tcaattctgcgtctgatggaagaggaagcgataaaagagaatacctctcaaatcgaagcc
gttgtgccagtcgatgtcgccgctttcctactcaacgagaaacgaaaagccattcgcatc
actgagcaacgtcatgatgtagaagtctatgtgatcccagatccaaatatgtctacgcca
gattaccgagtctcacgtcatcgcaaagacgatcagataagcgaagccagttataaactg
ctggagcagcctgtatccaatttgtatgagccccgtaagcttgagcgtgcagcgactcct
gagcccgcaataaaaggattcactgcgccagtaaaagcgcctgaacctaaagccaaggca
gcaacagcccctaaggcaactgaagaacctggtctaatcgctaagtttttcaccgctatt
ggtggactgttcaaagctgaaccaaaggctgaagagcccaagaagcaaagcgaatcaccc
agccagaaccgtaacaatcgtcgtcctgctcgcaagaatgattcacgtcgtaacgacagt
cgtcgtaatcgtgatgataaggagcaatcaggcgataagaatgagcgtacttcacgtcac
agccgtaataagcgtgctgattcaaatgaagagcgctcaagcagagataaaggcgatcag
ggcgagcaaggcaagcgtcaatctcgtcatgacagcaagccgactcgaactcgtcaacaa
gcagatgttactgatactactgatgcagctgatgcggctgatgcgactcctaaacaggaa
gttgccagagagcgtcgtcaacgtagaaatatgcgtaggaaagtacgtatagaaactgaa
aagtcacagcagcttgatgagcaacacacagaagcagtttctgctgaagtggttgtagaa
acagctccgatttcggttaaagaagataaacaggctcgtcctaagcgtcagcctcgtaag
gctaagcctaagactgatataaaagctaaggatgacgttcaagttactaaagcagctgaa
aacactacggcagaagtagagactacaacgccagaaactcagcaagacgacaaacttgat
actgtttctcaagatagcgtgacagttgaaacaagctcagtcgaagccagtgctactgaa
actagtgctgttgaagttgaagctaacgctgatgccactgatgataagccacgtgaaggt
cagcgtcgcagtcgtcgtagcccacgtcatcttcgcgctgcgggtcagcgtcgtcgccgt
gatgaagatgacggtgagactaatgctgatgcaactccagccttcatccctaatgaaact
gaagttgaatttcaagcgaatcaagcagcagtctctgcagctagcgcccagtctacaact
gaagcgcctgttacagcaccgactaagccagtagcgccagttcaagctgaagctccagta
cacgtcgaagctaaagctgaagctcaatcggcaccggcagctccgattaagcctgtagcg
ccagttcaagccgagactccagtgaaggtcgaagttaaagctgaagctcaatcggcatcg
gcagctccaactaagcctgcggctccggttcaagctgagactcaagtgaaagtcgaagtt
aaggctgaagctcaatcggcatcggcagtgccaactaagcctgcggctccggttaaagct
gagactccagtggaagtcgaagttaaagctgaagctcaatcggcatcagcagtgccaact
aagcctgcggctccggttaaagtcgaagtcaaggtagaagctctggctgcatcggcaccg
actaaaccagaagctcctgtacaagccgtagccaagcctgaagttaacacggtaaccgct
gcagcagccagacctgcgacaccggttaaagtagagactcagcagatagccccagaagca
acagccgaagtcaaagctaaagtggaaacaccagtgaagactctagctaagcctagaggt
gctagtcgctttggcactatggtgagttcagacatgatcgcacctgtggtggaaacgaga
gaaaacgtagatgtccctaaagggcgtcaatacgaagcatctgaatcttcaccagccgat
gctaagccgaaaacggcaaattcagctaattcggacatggccagaccataa
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