Shewanella psychrotolerans: K0I62_09995
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Entry
K0I62_09995 CDS
T09306
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I62_09995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_09995
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_09995
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I62_09995
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I62_09995
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K0I62_09995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
DDE_3
Motif
Other DBs
NCBI-ProteinID:
QYJ99802
LinkDB
All DBs
Position
complement(2261282..2263219)
Genome browser
AA seq
645 aa
AA seq
DB search
MQSLLQQYFGFDHFRAGQEQVITAITSGRSAAAIFPTGSGKSLCYQLPALILPHLTIVVS
PLLALIQDQLAFLQTKGIPAASIDSTQSREQSQAVMSGVRQGKIKILMISVERFNNERFR
EFISSIPISLLVIDEAHCISEWGHNFRPDYLKLPQYVKELSIPQVLLLTATATAKVIQDM
GAKFTIAPADIAVTGFYRPNLNLHVQGVKAQDKLTALVDWLRKRDGHHGIIYVTLQQSAE
EVAKALSRQGLNALAYHAGMDSDKRQQVQKAFMSGRCPIIVATIAFGMGVDKQDIRFVVH
FDLPKSIENYAQEIGRAGRDGQVAECLVLANTDNLNVLQNFVYGDTPDRRGIAYVLNDIA
TASRTSHKWEVVLNHLSAQSNVRLLSLKTLLVYLEMLNIIKPSFSYYAEYRFKLLCSESE
LVTRFTGERQRFVQALLNSSQKAKIWYSIDFDSLNSCYPSDRRRVISAINYFEEKGLIEL
QTKQITEVYQLLKLNENIDETVDMLANKFLIKERSEIARIQAMVDLLASNTCLTRRLSEY
FADTQVPEQCGHCSVCTKGGAILPSSSKLTPLSQLDFSSLCHDLIIPLKGTHMADANMLA
RALCGLTTPLFTQLKMRRVHSFAALEAYPFAEVRLWCEQHVEASL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatcacttcttcaacagtattttggttttgatcactttagagcgggtcaggaacaa
gtcattaccgccataacatctggccgtagcgctgcggccatctttcctactggctctgga
aaatcgctctgttaccagttacccgctttgattttgcctcatttgactattgtggtttcg
ccattgcttgcgcttattcaagatcaattggcatttttacagacaaaaggcatccccgca
gcgagcatagattcaacccagagccgagagcaaagtcaggcggtgatgagtggcgttagg
caaggtaagatcaaaattttgatgatctcggtcgagcgttttaacaatgagcgatttaga
gagtttatctcaagtatcccgatctcattgcttgtgattgacgaagcccactgcatctcg
gagtggggtcataactttcgtcccgattacctaaaattaccccaatatgtaaaagagctg
tctattcctcaggtgcttttattgacggcaactgcgacagctaaagttatccaggacatg
ggcgccaagtttactatcgcgccagcagacattgcggtaacaggattttaccgaccaaat
cttaatcttcacgtccaaggagttaaagcgcaagataaattaaccgcattggttgattgg
ctaaggaagcgagacgggcatcacggcatcatctatgtgacattgcagcaaagcgcagag
gaagtggcgaaagcgctaagcaggcaaggtctcaatgcgttagcttatcatgcagggatg
gacagtgataagcgtcagcaggttcaaaaggcatttatgtcgggtcgatgtcctattatt
gttgcgacgatcgcttttggaatgggggtcgataagcaagatattcgatttgttgttcac
tttgatctgccaaaatcgatcgaaaattacgcccaggaaataggtcgtgctggacgagat
ggtcaagtggcagaatgtttagtgctcgccaataccgataatctcaatgtgttacaaaat
tttgtttatggggatacaccagatcgaagaggaatagcctatgtgcttaatgacattgcg
acagcaagtcgaacttctcataaatgggaagtggtattaaatcacttatcggctcaatca
aatgtgcggctattgagtttaaaaaccttactcgtgtatttagaaatgctcaatattatt
aaaccctcgtttagctattacgctgaataccgcttcaagctgctctgtagcgaatcagaa
ttggtgactaggtttacgggcgagcggcagcgatttgttcaggcgttactcaatagttct
caaaaagcaaaaatttggtacagcatagacttcgattcgctcaatagttgctatccaagc
gatcggaggcgggttatttctgcgattaattattttgaagaaaagggtctgattgagttg
caaacaaagcaaataactgaggtttatcagttattaaaattaaacgaaaatattgatgaa
accgtcgatatgttagcgaacaagttcctaattaaagagcgaagtgagatagccagaatt
caggctatggtcgatctactcgcaagcaatacgtgtcttactaggcggttgtcggaatac
tttgcagatactcaagtcccagagcagtgtggtcattgctctgtttgtactaaggggggc
gcgattctacctagtagtagcaagcttacaccattgagccagctcgacttctcatcctta
tgtcatgatttaattattccgctaaaggggacgcacatggccgatgcaaacatgttggct
agagcactttgtgggttaaccacaccattatttactcaattgaaaatgcgccgggttcac
tcatttgccgcgcttgaagcttatccttttgcggaggttaggctctggtgtgagcagcat
gttgaagcgagtttgtaa
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