Strongylocentrotus purpuratus (purple sea urchin): 580354
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Entry
580354 CDS
T01019
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03013
Nucleocytoplasmic transport
spu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
580354
03015 mRNA surveillance pathway
580354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
580354
03041 Spliceosome [BR:
spu03041
]
580354
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
580354
Spliceosome [BR:
spu03041
]
Complex C
Other components
EJC/TREX
580354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
LbR_Ice_bind
Motif
Other DBs
NCBI-GeneID:
580354
NCBI-ProteinID:
XP_030854358
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MATVEGVNAFLAQRLEKAKENLEDVEQNIRKLTGGDSTERRVSVGDSRRLIVGEQRRISG
DQRRVSGDQRRLVSDQRRPLSDQRIERRLSGDQRRLSADQRGVSGDQRRVSMDAPGARGR
GGGLIVQRLSLMERLGAPPAKRPNLGNPFSRLGGRVGPRNRAPSDDEEEDLDHKPLVQSS
VVTTLTTLTPKTRQQTIKEGQKDKKSTDRNKRMFGHLLGTLQKFRDESDSKTDKDKRRKE
IEKKLDEKAVEEKKAVAEERKLLMRDRKDKQAELNRLEQLVELTQEHKEWDAHSAVLSNY
IRTRAKPSIFYKPAKWTLGTEKLFKESKQILSAAVEKRKAELEKEIAELEGKPTKEEEKK
EEDEDSKKDRRRSGEDRRKSGEDRRRSVEERRRRHSNQDEVKGKKDDRDSSHVREDREKH
GSDEKRRDRKRSRHEDDKEAKVSKPKDSAKIEEDQSSKDKEDESLKERTAETNPDHDEKK
EKRKMMMVRWKVSMKKR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgtcgagggtgtgaacgctttcctagctcaaagactagaaaaagccaaggaa
aacctagaagatgtggagcaaaacattcgtaaactcaccggaggagattccaccgaaaga
agggtgtcagttggagattcaaggaggctcattgttggagagcagagaagaatatcaggt
gatcagaggagggtgtcgggtgatcagaggagacttgtaagtgaccaaaggagacctttg
agtgaccaaaggattgagaggagactctcaggtgaccagagaaggctttcagctgaccag
agaggcgtatccggtgaccaacgtagagtctccatggatgcaccaggagcacggggtaga
ggcggaggattgatcgtacagaggctttcactgatggagagacttggggcaccgcctgct
aagagacctaacctgggaaatccatttagcaggctaggaggacgagtgggaccaaggaac
cgagcccccagtgatgatgaggaagaggacctggatcacaagcctcttgttcaatcctct
gtggtaactaccctcacaacattgacacccaaaacccgtcaacagactatcaaagaagga
cagaaagacaagaagagtactgataggaacaagcgcatgtttggtcaccttttaggcacc
ctgcagaagttcagagatgagagtgattcaaagacagacaaggacaagcgcaggaaggag
attgagaagaaactggatgagaaagccgtagaagagaagaaagctgtggcagaagagagg
aaacttttaatgagggaccggaaagataagcaggcagagctcaatcgtctagaacagctc
gttgaactcacacaggagcacaaggaatgggatgctcactctgccgtgctaagtaactac
atccgcaccagagccaaaccttccatcttctacaagcctgccaaatggactctgggtaca
gagaaactcttcaaagagtctaagcagatactgagtgctgctgtagagaagcgtaaagcc
gagctggagaaagagatagccgagttagaagggaagcccaccaaagaagaggagaagaaa
gaagaagatgaagactctaagaaggacaggagaaggagcggagaggacagaaggaagagc
ggtgaggacagaagacggagcgtggaggagagaagacgtcgccatagtaaccaagatgag
gtaaagggtaagaaggatgatagggatagctcacatgttagggaagatcgtgagaagcat
ggcagtgatgaaaagcgaagagacagaaaaaggtctaggcatgaagatgacaaagaagca
aaagtttccaaaccgaaagactctgctaagattgaagaggatcagtcttctaaagataaa
gaagatgaatccttgaaagagagaactgctgaaacaaaccctgatcacgatgaaaagaag
gagaaaaggaagatgatgatggtaagatggaaggtaagtatgaagaagaggtga
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