Sphingomonas qomolangmaensis: NMP03_11595
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Entry
NMP03_11595 CDS
T08594
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sqo
Sphingomonas qomolangmaensis
Pathway
sqo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NMP03_11595 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sqo03400
]
NMP03_11595 (ligD)
Enzymes [BR:
sqo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NMP03_11595 (ligD)
DNA repair and recombination proteins [BR:
sqo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NMP03_11595 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UUL81836
LinkDB
All DBs
Position
complement(2448556..2451033)
Genome browser
AA seq
825 aa
AA seq
DB search
MAKAPDPLAKYNAKRDFSRTAEPAGTLEKGKGNRFIVQKHDASRLHYDFRIEVDGVLKSW
AVTRGPSLNPDDKRLAVRTEDHPLSYGDFEGVIPAKEYGGGTVMLWDDGSWAPIAGKSAK
DIEDGHLHFILDGQRMRGEWMMIRLKPRGKERGENWLLRKVNDAYAGGSDALVEGELTSV
KTGRTMAEIAEGKAAPKILPQRGRGTAPAGRGGGGEPQAVRSRKAPSTAGGGFRALQLAT
LVDSVPAGNGWLHEVKYDGYRALISTGPSAKVFTRSGLDWSDKFPGIVAVAETIAPALID
GEIVAFKDGKPDFSTLQKAISEGGDGLTLFAFDLLAEGGEDLAALPLVQRKERLRPLIPA
EDDRIQFAEHVVGAGEELFEAMCREGYEGIVSKKIDAPYRGTRTKAWLKVKCTRRQEFVI
VGWLPTKAKGRGFASLLVGLHGDDGLVYAGKVGTGFDAATQDDLLGRLEKLARKTAPVDV
PQAAARGAQWVTPKLVAEVAFAEFTGEGVLRHASYLGLRGDKAAKDVVAEVPVAVERAAS
SVKISSADRIIFPEDGITKGQLADYYADVAGILLPFAANRPISLVRCPQGRAKQCFFQKH
DAGSFGKQVHQVDIREKDGSTEPYLYVDDADGLAACVQMGTIEFHGWGSLVGDVEKPDRL
VFDLDPDEGLGFDEVKRAAIDIKTQLADLGLTSFAMLSGGKGVHVVVPLTPVAQWPAVKS
FADRFCRALAANEPERYVATMSKAKRKGRIFLDWLRNQRGSTAVLPYVARARPGAPVAAP
VSWTELKDIDTPARWSVRDAAELIERANGRGLAGWGAARQVLPDL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaagcccccgatccgctcgccaaatataacgccaagcgcgatttctcgcgtacc
gccgaacccgccgggacgcttgagaagggcaagggcaaccgcttcatcgtgcagaagcac
gacgccagccggctgcattatgatttccgcatcgaggtcgacggggtgctcaagagctgg
gcggtgacgcgcgggcctagcctaaaccccgacgacaagcgcctcgcggtgcgaaccgag
gaccatccgctgtcgtatggcgatttcgaaggcgtgatcccggccaaggaatatggcggc
gggacggtgatgctgtgggacgacggcagctgggcgccgatcgcgggcaagtcggcgaag
gatatcgaggacggccatctacacttcatactcgacgggcagcggatgcgcggcgagtgg
atgatgatccggctgaaaccgcgcggcaaggaacgcggcgagaactggctgctgcgcaag
gtgaacgatgcctatgcggggggatcggatgcgctggtcgagggcgaactgaccagcgtg
aagaccgggcggacgatggccgagatcgccgaggggaaggcggcccctaaaatcctcccc
cagcgggggagggggaccgcgcccgcagggcgtggtggagggggggagccgcaggcggtg
cgctcgcggaaagccccctccaccgctgggggaggatttagggcgttgcagctcgccacg
ttggtcgactcggtgcctgccgggaacggctggctccacgaggtaaaatatgacggctat
cgcgcgctgatctccaccgggcctagcgccaaggtcttcacgcggtcggggctcgactgg
tcggacaagtttcccgggatcgtcgcggtcgccgaaacgatcgcgcccgcgctgatcgat
ggcgagatcgtcgcattcaaggatggcaagcccgatttctcgacattgcagaaggcgatt
tcggagggcggcgacgggctgacattgttcgcgttcgacctgctggcagaaggtggtgag
gatcttgccgcattgccgctggtgcagcgcaaggagcggttgcgtccgctgatccccgcc
gaggacgatcgcatccagttcgccgagcatgtcgtcggcgcgggcgaagagctgttcgag
gcgatgtgccgcgagggctatgaggggatcgtgtcgaagaagatcgacgcgccctatcgc
ggcacgcggaccaaggcgtggctgaaggtgaagtgcacgcggcggcaggaattcgtgatc
gtcggctggctgccgaccaaggccaaggggcgcggcttcgcgtcgttgctggtcgggctg
cacggcgacgacggcctggtctatgcgggcaaggtcgggacgggcttcgatgccgcgacg
caggacgatctgctgggacggctcgaaaagctcgcgcgcaagaccgcgccggtggacgtg
ccccaggccgcggcgcgcggggcgcagtgggtgacccccaagctggtcgccgaggtggcg
tttgccgaattcaccggagagggcgtgctgcggcatgcgagctacctcggcctgcgcggc
gacaaggcggccaaggacgtggtggccgaggtgccggtggcggtcgagcgcgcggcgtcg
agcgtgaagatcagcagcgccgatcgcatcatctttcccgaggacgggatcaccaagggc
cagctcgccgattattatgccgatgtcgcgggaatcctgctgcccttcgcggcgaaccgg
ccgatcagcctggtgcgctgtccgcaggggcgcgccaagcaatgcttcttccagaagcac
gacgcgggaagcttcggcaagcaggtccaccaggtcgatatccgcgagaaggacggatcg
accgagccgtatctatatgtcgacgacgccgacggcctggcggcgtgcgtgcagatgggg
acgatcgagtttcacggctggggatcgctggtgggcgatgtcgaaaagcccgatcggctg
gtattcgacctcgaccccgacgaggggctcggcttcgacgaggtcaagcgcgcggcgatc
gatatcaagacgcaattggccgatctggggctgacgagcttcgcgatgctgtcggggggc
aagggggtgcatgtggtggtgccgctgaccccggtggcgcagtggcccgcggtcaagtcg
ttcgccgaccgcttttgccgcgccttggcggcgaacgagcccgaacgctatgtcgcgacg
atgtcgaaggccaagcgcaaggggcggatcttcctcgactggctgcgcaaccagcgcggg
agcaccgcggtgctgccgtatgtcgcgcgcgcacggccgggggcgccggtggcggcgccg
gtgtcgtggaccgagctcaaggacatcgacacccccgcacgctggagcgtgcgcgatgcc
gccgagctgatcgaacgtgcgaacgggcgcgggctggcaggctggggcgcggcgcggcag
gtgctgcccgatttgtga
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