KEGG   Streptomyces rapamycinicus: M271_24695Help
Entry
M271_24695        CDS       T02907                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
src  Streptomyces rapamycinicus
Pathway
src03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:src00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    M271_24695
Enzymes [BR:src01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     M271_24695
DNA repair and recombination proteins [BR:src03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     M271_24695
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AGP56433
UniProt: A0A0A0NK22
LinkDB All DBs
Position
6102666..6103604
Genome map
AA seq 312 aa AA seqDB search
MSEKRTDARNVRTGSHTVRVSRPEKELFPDDGITKWDLVEYYRSLSRRIIPQLRGRPLMM
ERHPDGIGGKPLMQKNAPDHFPDWVRRAVLPKEGGEVTHVVCDDTATLLYLADQACVTPH
RWLSRADRPDHPDRLVFDLDPPSSGESGFEEVRWTARRCCGLLGELGLPGLLMTTGSRGL
HVIVPLDRRADFDTVRAFARDAADLLAARHPDRLTTEPRKAKRRGRLYLDIQRNAYAQTA
VSPYGVRARPGAPVATPIDARELDDPELRADRWTLRTVGERLADDPWARTDTRGRSLRGP
RERLKRLAEGEG
NT seq 939 nt NT seq  +upstreamnt  +downstreamnt
atgagcgagaagcggaccgatgcgcggaacgtcaggaccgggagccacaccgtacgagtc
agccggccggaaaaggaactcttccccgacgacgggatcacgaagtgggacctcgtcgag
tactaccggtccctctcccggcgcatcattccgcagttgcgcggccgccctttgatgatg
gaacgtcatccggacggaatcggcggcaagccgctgatgcagaagaacgcacccgaccac
tttccggactgggtgcgccgcgccgtgctccccaaggagggcggtgaggtcacccatgtg
gtctgcgacgacaccgcgaccctcctctacctcgccgaccaggcgtgcgtcaccccgcac
cgctggctctcccgggccgaccggcccgaccaccccgaccggctggtcttcgacctcgac
ccgccctcgtcgggggagtccgggttcgaggaggtgcgctggacggcccgccgctgctgc
gggctgctcggcgagctcgggctgccggggctgctgatgaccaccggctcgcgcggactg
catgtcatcgtcccgctggaccgccgcgccgacttcgacaccgtgcgggccttcgcccgc
gacgccgccgacctgctggccgcccgccatcccgaccggctcaccaccgagccgcgcaag
gccaagcggcgcggccggctctacctggacatccagcgcaacgcctacgcccagaccgcc
gtcagcccgtacggggtgcgtgcccggcccggagcacccgtggccacgcccatcgacgcg
cgggagctggacgacccggagctgagggccgaccgctggaccctgcggacggtcggcgag
cggctcgcggacgacccctgggcccgtacggacaccaggggccgttcgctgcgcggcccc
cgcgagcggctgaagcggctcgcggagggcgagggctga

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