Streptomyces rapamycinicus: M271_24695
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Entry
M271_24695 CDS
T02907
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
src
Streptomyces rapamycinicus
Pathway
src03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
src00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M271_24695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
src03400
]
M271_24695
Enzymes [BR:
src01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M271_24695
DNA repair and recombination proteins [BR:
src03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M271_24695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF6207
Motif
Other DBs
NCBI-ProteinID:
AGP56433
LinkDB
All DBs
Position
6102666..6103604
Genome browser
AA seq
312 aa
AA seq
DB search
MSEKRTDARNVRTGSHTVRVSRPEKELFPDDGITKWDLVEYYRSLSRRIIPQLRGRPLMM
ERHPDGIGGKPLMQKNAPDHFPDWVRRAVLPKEGGEVTHVVCDDTATLLYLADQACVTPH
RWLSRADRPDHPDRLVFDLDPPSSGESGFEEVRWTARRCCGLLGELGLPGLLMTTGSRGL
HVIVPLDRRADFDTVRAFARDAADLLAARHPDRLTTEPRKAKRRGRLYLDIQRNAYAQTA
VSPYGVRARPGAPVATPIDARELDDPELRADRWTLRTVGERLADDPWARTDTRGRSLRGP
RERLKRLAEGEG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaagcggaccgatgcgcggaacgtcaggaccgggagccacaccgtacgagtc
agccggccggaaaaggaactcttccccgacgacgggatcacgaagtgggacctcgtcgag
tactaccggtccctctcccggcgcatcattccgcagttgcgcggccgccctttgatgatg
gaacgtcatccggacggaatcggcggcaagccgctgatgcagaagaacgcacccgaccac
tttccggactgggtgcgccgcgccgtgctccccaaggagggcggtgaggtcacccatgtg
gtctgcgacgacaccgcgaccctcctctacctcgccgaccaggcgtgcgtcaccccgcac
cgctggctctcccgggccgaccggcccgaccaccccgaccggctggtcttcgacctcgac
ccgccctcgtcgggggagtccgggttcgaggaggtgcgctggacggcccgccgctgctgc
gggctgctcggcgagctcgggctgccggggctgctgatgaccaccggctcgcgcggactg
catgtcatcgtcccgctggaccgccgcgccgacttcgacaccgtgcgggccttcgcccgc
gacgccgccgacctgctggccgcccgccatcccgaccggctcaccaccgagccgcgcaag
gccaagcggcgcggccggctctacctggacatccagcgcaacgcctacgcccagaccgcc
gtcagcccgtacggggtgcgtgcccggcccggagcacccgtggccacgcccatcgacgcg
cgggagctggacgacccggagctgagggccgaccgctggaccctgcggacggtcggcgag
cggctcgcggacgacccctgggcccgtacggacaccaggggccgttcgctgcgcggcccc
cgcgagcggctgaagcggctcgcggagggcgagggctga
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