Spirosoma radiotolerans: SD10_04615
Help
Entry
SD10_04615 CDS
T03819
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srd
Spirosoma radiotolerans
Pathway
srd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD10_04615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srd03019
]
SD10_04615
03009 Ribosome biogenesis [BR:
srd03009
]
SD10_04615
Enzymes [BR:
srd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SD10_04615
Messenger RNA biogenesis [BR:
srd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD10_04615
Ribosome biogenesis [BR:
srd03009
]
Prokaryotic type
rRNA helicases
SD10_04615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UBA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AKD54299
UniProt:
A0A0E3ZU88
LinkDB
All DBs
Position
complement(1198628..1200793)
Genome browser
AA seq
721 aa
AA seq
DB search
MKTKTNKSADQDALLDIEKIATEMAASAVAPADEATSESKTAKVPKKKVAKPAVESETSF
DDTATELIADGIADKVVIVADEPMPTADAAAPVVATAPKADPNQLLFSDLAISAELLSAV
TDMGFTSPSPIQAEAIPPILEGRDVIGQAQTGTGKTAAFGIPALDLIDIQDRSVQTLILC
PTRELALQVAEEIKKLAKYKRGVRIEAIYGGDSIERQIRSLKSGVHIVIGTPGRVMDHME
RNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFSATMSKPIMQITQKF
QKDPVLVKVVKKELTNVNIEQVYFEVKAKAKVEVMCRLIDMYDLKLMLVFCNTKRKVDEI
VEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAARGIDVDDVDAVINFD
IPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVKVEKGVIPSFEDIVG
VRKARFIEQLQQTIQESKDLNLYDDLLTQLNHAGFSTEQVVAALVKRSMGLEKNEFADQN
LNLEDDRRNGRDKYADRGRGDGASRFEDRRGGRSDSSSRFGDRRSDDRGGSRFGDRDGGR
SDSRFGDRRSAGAERPRFNDRNDGGERKPYFERDDQRAPRERDANMTRLMVSIGRKDFVR
PGDIVGAIAGEANIPGSSIGSIDIFDKFTYVDVPKDVANRVVDAMEGNTIKGRRVNIELA
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaaacaaataaatccgccgatcaggatgcactcctggacattgaaaaaata
gccacggaaatggccgctagtgcggtcgctccagccgatgaggcaacatctgaatctaaa
acggctaaggttcctaagaagaaagttgccaaaccagccgttgaatctgaaacatcgttt
gatgataccgctacagaactcattgctgacggcattgccgataaggtagtgatcgttgcc
gatgagcccatgccaacagccgacgcagccgcgccagtcgttgctacagccccaaaagct
gatccgaatcaattgttattctctgatctggctatttcggcagaactgctatcggccgtt
acagacatgggttttacgagcccatcgccgattcaggcagaagccattccccctattctg
gaaggtcgcgatgtaatcggacaggcacaaaccggcaccggtaaaacggcagctttcggt
attcccgcgctcgacctgatcgacattcaggatcgttcggtgcaaacgcttattctttgc
ccaacccgcgaactggcgttgcaggtagccgaagaaattaagaaactggcaaaatacaag
cggggcgttcggatcgaggctatctatgggggcgactccattgagcggcaaatccggtct
ctcaaaagtggtgtgcacatcgttattggtacgcccggtcgcgttatggaccatatggaa
cgtaacacgctcaaactcaacaacgtgaagatgatgattcttgacgaagctgatgagatg
ctggacatgggcttccgcgaagatattgagagcattctggaagaaatgcctgaagagcgg
caaacgatcctgttctcggcaacgatgtcgaagccgatcatgcagatcacccagaagttc
cagaaagatcctgtcctggtgaaagttgtcaaaaaagaactgacaaacgttaatatcgaa
caggtctattttgaagtaaaagcgaaagcaaaagtggaagtgatgtgtcgtttgatcgac
atgtacgacctcaaattgatgttggtattctgtaatacgaaacggaaggtcgacgaaatc
gttgaagatttgcaaatccggggctatcaggccgaaggcttgcatggtgatctacgccag
gcgcaacggaacaacgtgatgagcaaattccgggcgggcacaaccaacattctggtagcg
accgacgtagccgctcgtggtatcgacgttgacgacgtcgatgcagttatcaacttcgat
attcccctcgacgaagaatattacgtacaccggatcggccggacgggccgcgcgggtaaa
tcgggtcgggccttctcgtttgttggtcgcgatgagaaatatcgtttccgtgaaatccag
acgtatacgaaagttaaggtggagaaaggggttattccttccttcgaagatatcgttggc
gtacggaaggctcgtttcatcgagcaactccaacaaacgattcaggagagtaaagacctg
aacctgtacgacgacttactgacgcagttaaatcacgccggtttctcgactgaacaggtt
gtggctgccctggtgaaacggagcatgggtctggagaaaaatgagtttgccgatcagaac
ctcaacctggaagatgatcgccggaatggccgcgacaagtacgcggatcgtggccggggt
gacggggccagtcgttttgaggatcgtcggggtggccggagcgacagttcgtcccgtttt
ggggatcgtcgtagcgacgatcgcggtgggtcacgctttggtgatcgcgatggtggccgg
agcgactcccgtttcggtgatcgccggagcgctggcgctgaacgccctcgtttcaacgac
cggaatgacggtggtgagcgtaagccttatttcgaacgcgatgatcagcgcgcaccccgt
gagcgtgatgccaacatgactcgcctgatggtgagcattggtcggaaagatttcgttcgt
ccgggcgacatcgttggtgccattgctggtgaagcgaacattccgggcagcagcatcggt
agcatcgatatcttcgacaagttcacctatgttgacgtaccgaaagatgtagccaaccgc
gttgtcgacgctatggaaggtaacacaatcaaaggtcgccgggttaatattgaactcgcc
cggtaa
DBGET
integrated database retrieval system
