Salpingoeca rosetta: PTSG_06940
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Entry
PTSG_06940 CDS
T04136
Name
(RefSeq) DEAD/H box polypeptide 3
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sre
Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_06940
03041 Spliceosome [BR:
sre03041
]
PTSG_06940
03036 Chromosome and associated proteins [BR:
sre03036
]
PTSG_06940
Enzymes [BR:
sre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTSG_06940
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PTSG_06940
mRNA cycle factors
Common to processing body (P body) and stress granule
PTSG_06940
Spliceosome [BR:
sre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
PTSG_06940
Chromosome and associated proteins [BR:
sre03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
PTSG_06940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
16072901
NCBI-ProteinID:
XP_004992341
UniProt:
F2UF88
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MGDPQSLGQQLADMTLGPNGGHAQVPMSKPPNRYVPPHLRHQAAPPPQMQMQAQMMMAPP
HAPPQGQPQQVWAAPPVDQRQMYAAPPQHQPAPGAVYQPPHGGGWNTGGSWGGYQQQPRG
GYDRFGRGGGYSRGFGGGGRGRDRGGDRFGRPGGYGRRGGRGFSSQYDRPGEDWTEMLPA
DERLEGELFSGQLTGINFDKYDDIPVSATGTEVPEPVSDFFDCGLADVVTNNLRLAGYTK
PTPVQKYSIPIVTARRDLMACAQTGSGKTAAFLVPIISRVLETGPVEVPETARRMEGKQF
PVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGTDFRSQFRDLQRGCQVLVATPGR
LVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRIVEQDTMPPPGVRQTLMFSATFP
KDIQVLARDFLHDCVSISVGRIGSTTENIFQKVYWVQEHEKRQTLLDLISAASEKELVLV
FVETKRGADALEDFLIHQQFPASSIHGDRTQEQRERALASFRDGYTPILVATAVAARGLD
IPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQAISFFNDKNANVARDLLDTLRECKQE
VPDWLEDFSRRARGGRRGGGGRRGGRSGGRGRGGGRDYGSRNGGGGGGFSGGYGGGNFGG
PSYGGGFGGPSYGGGRGFDAPRYPSGGNASSGSSYMPRQPQPASSGKDWW
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatccacagagccttggccagcagcttgctgacatgacccttggtcccaacggc
ggacacgcccaagtccccatgtccaaaccgccaaaccggtacgttcctccccacctgcgc
catcaggccgcgccaccgccgcagatgcaaatgcaggcgcagatgatgatggctccacca
cacgcgcctcctcagggccagccccagcaggtgtgggctgcgccgcctgttgaccagcgg
cagatgtacgctgcgcccccgcagcaccagcccgcgcccggcgccgtctaccagccgcct
cacggcggtggctggaacacaggcggcagctggggtggctaccagcagcaaccgcgtggc
ggttacgatcgctttggtcgtggcggcggctactcccgcggctttggcggcggcggtcgc
ggtcgcgatcgtgggggtgaccgttttggtcgcccaggcggctacggccgacgcggaggc
cgcggtttctcctcgcagtacgaccgccccggcgaggactggacggagatgctccctgcc
gacgagcgcctcgaaggcgagctgttcagcggccagctgacaggcatcaactttgacaag
tacgacgacattcccgtctccgccaccggcaccgaggttccggagcccgtgtcggacttt
ttcgactgcggcctggcggatgtggtgaccaacaacctgcgcctggctggctacaccaag
cccacgcccgtgcagaagtactccatccccattgtgactgcccgccgcgacctcatggcg
tgcgcccagacgggttccggcaagacagccgctttcctcgtccccatcatcagccgcgtg
ctggagacgggccctgtggaggtcccagagacggcccgccgcatggagggcaagcagttc
cccgtgtgcctcatcctcgccccaacgcgcgagctggcctcgcagattttcgccgaggcg
cgcaagttcgcctaccgcgccaagatccgcgcctgctgcgtgtacggcggcacggacttc
cgcagccagttccgcgacctgcagcgcggctgccaggtgctggttgccacccccggccgc
cttgtcgacctgctcgagcgcgggcgcatcggcatggacgccatccgcttcctcgtgctc
gacgaggccgaccgcatgctggacatgggctttgagccccagatccgccgcattgtcgag
caggacaccatgcccccacccggcgtgcgccagacgctcatgttctccgccaccttcccc
aaggacatccaggtgctcgcgcgcgacttcctgcacgactgcgtgtccatctccgtgggg
cgcatcggctccaccacggagaacatcttccagaaggtgtactgggtgcaggagcacgag
aagcgccagacgctgctggacctcatctccgccgccagcgaaaaggagctcgtcctcgtc
tttgtcgagacgaagcgcggtgccgacgccctggaggactttctcatccaccagcagttc
ccggcctcgtccatccacggcgaccgcacccaggagcagcgcgagcgcgccctggccagc
ttccgcgacggctacacgcccatcctcgtcgccaccgccgtcgctgcccgcggtctcgac
atccccaacgtcaagcgcgtcatcaactttgacctgccctcggacattgacgagtacgtg
caccgcattggccgcacgggccgcgtcggccacaagggccaggccatctccttcttcaac
gacaagaacgccaacgtcgcccgcgacctgctcgacacgctgcgcgagtgcaagcaggag
gtccccgactggctggaggacttttcccgccgtgcccgcggtggtcgtcgtggcggcggc
gggcgccggggcggtcgcagcggtggacgcggccgtggtggcggtcgcgactacggcagc
cgtaacggcggcggcggcggcggcttcagtggtggctatggcggcggcaactttggcggc
ccaagctacggtggcggtttcggcggtcccagctacggcggcggtcgcggttttgatgcc
ccacgctatccaagcggcggcaacgccagcagcggtagcagctacatgcctcgccagccc
cagcccgcctcctcgggcaaggactggtggtaa
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