Shewanella rhizosphaerae: K0I63_08160
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Entry
K0I63_08160 CDS
T09262
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I63_08160 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhs03019
]
K0I63_08160 (rne)
03009 Ribosome biogenesis [BR:
srhs03009
]
K0I63_08160 (rne)
Enzymes [BR:
srhs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K0I63_08160 (rne)
Messenger RNA biogenesis [BR:
srhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K0I63_08160 (rne)
Ribosome biogenesis [BR:
srhs03009
]
Prokaryotic type
rRNA processing factors
K0I63_08160 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QYK14436
LinkDB
All DBs
Position
complement(1800576..1803992)
Genome browser
AA seq
1138 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDAAEL
KWDLKVLQHHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQA
KQHVALVRPDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVTRHRKDDQISESSYKLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDAPTQAAP
APAKPAEKAQEPGLIAKLFAAIGKLFGGEPEQPKEEVKKEQPRRNAQNRNSRRNNRRNDT
RKGRDEGKETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDKPQSQNKDTESQAQHPKQ
EAARERRQRRNMRRKVRVQSEQQLADEAALAVEVAEMANDEQVQVPAAEATAEDKPQRQK
RQPRKSKPKQEKVDKLEDETQAEQVAAEDTAGEQPAVETQAASEPQTAVDTEVTAQVEAH
ADEAQAEEASAQQQEGESEGKREPREGQRRSRRSPRHLRAAGQRRRRDEEGNGEVNNGEP
AFIPNEVETAPLLGEQLDLEGSVVEAASEVQTPVTEQETVKQEANEVTTVAETTVIETTV
TETTVTEEAPAKAAAEEASQEESKPKSRRRAPKAKVASEEETSVEETQQSLPLAGEAKAS
LKEEVQAELDLTSTPEEVKASQEAAPQVDDVAAQTEEPVAVETAPVETPEVEVEAKTETE
APVTEAPAAKESSAASAPMAKPAAVPAPTAKVKPAAKVEATPAEEKPEEKASDEAEKPAP
KATSRFGSMVSSTMTKPEVEARTLVDTPSGRQYEATAKEASAEPVKRGNSANSEMARP
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcgactcaatctgaagagttgcgcgttgccctcgttgat
gggcaacaactgtacgatctcgacattgagagtcctggtcacgagcagaagaaagccaac
atctacaagggtaaaatcacccgcgtagaaccctctctcgaagcggctttcgtcgactat
ggcgccgagcgtcatggtttccttcccctcaaagaaattgcacgcgaatacttccctaaa
ggttactctttccaaggccgtcctaacatcaaagaggtggttaaagagggccaggaagtc
atagtacagattgacaaagaagagcgtggcaacaagggcgcggccctgaccaccttcatc
agtctggcaggctcttacctggtgctgatgccaaacaaccctcgcgccggcggtatctct
cgtcgaatcgaaggcgatgagcgtaccgagctaaaagcagccatgtcagagctggaagtg
ccgcaaggcatggggcttatcgtgcgcaccgccggtgtaggtaaagacgctgccgagctg
aaatgggaccttaaggttcttcagcaccactgggctgccatcgaagaagcggcgcaaaac
cgccctgcacctttcctgatccatcaggaaagtaacgttatcgttcgcgccatccgcgac
tacctacgccgcgacgttggcgaagtactgatcgaccatcagcgtatctacgaacaggcc
aaacaacacgtggctttggtgcgtcctgactttgtcgatcgtatcaagcgctacgaggcg
gaagtaccgctgtttacccatttccagattgaaactcagatcgaatctgccttccagcgt
gaagtgcgtcttccttctggtggttctatcgttatcgatccaaccgaagcattgacctca
atcgatatcaactcggcccgtgcgactaagggcggcgatatcgaagaaactgcgctcaat
accaaccttgaagcggccgacgagattgcccgtcagctgcgtctgcgtgacttgggcggc
ctggtcgttatcgatttcatcgacatgacaccggtcagacatcaacgcgaagtcgaaaac
agaatgcgcgacgccgtgcatcacgacagagcccgtgttcaactgggccgcatctctcgc
ttcggtctgatggagatgtcgcgtcagcgtctgcgtccgtcactggaagagtctgccgcg
cacctgtgtccacgctgtcatggccagggcaccatccgtggtaccgaatcactggcgctc
tctatcctgcgtctgatggaagaggaagcgatcaaagagaacacctctcagattgaagcg
atcgtccctgtcgatgtcgccgccttcctgctcaacgaaaagcgtaaagccattcgtatc
actgagcagcgtcatgatgtcgaagtctatgtgatccctgatccaaacatgacgacacct
gactaccgtgtgacccgccaccgcaaagacgatcagatcagcgagtcaagctacaagttg
ctcgagcagcctgagtctaagctctacgagccgcgcaaactagagcgcgccgcatcacct
gagccagcactgaaaggcttctcgacaccggttaaggatgccccaacccaggcggctccc
gcgccagccaagccagctgaaaaggctcaagagccaggtttaattgccaagctatttgcc
gccatcggcaagctgtttggtggtgagccagagcagccaaaggaagaggtcaagaaagag
cagcctcgtcgcaacgcgcaaaaccgtaacagtcgtcgcaacaaccgtcgcaacgataca
cgtaagggccgcgacgaaggcaaagagacagacaacaagcgcagccgtagtgccaagcct
gatgacgcggatagccgcagtgcgaagagccgtaatgagaaacgccaaaagcgtgaccgt
gacgacaagccgcagagtcagaacaaagacacagaaagccaagcgcaacacccaaagcaa
gaagccgctcgcgagcgtcgtcaacgccgcaacatgcgccgcaaggtacgtgtgcagtct
gagcagcagcttgccgatgaggccgcactcgccgtcgaggttgccgagatggccaacgac
gagcaggtacaagtgccagccgcagaagccactgcagaggataagccacagcgtcagaag
cgtcagccacgtaagagcaagcctaagcaggaaaaagtcgacaagctagaagacgagact
caagccgagcaagtcgccgctgaagacacagccggcgaacagccagctgtcgagactcag
gcagcgagcgaacctcaaacagcagtcgataccgaagtgacagcacaagtcgaagcgcat
gcagacgaagctcaagcagaagaggctagtgctcaacagcaagaaggcgagtcagaaggc
aaacgcgagccaagagaaggccaacgtcgtagtcgtcgtagcccacgtcatctgcgcgcc
gccggtcaacgtcgtcgccgcgatgaagaaggcaatggtgaagttaacaatggcgagccc
gccttcattccaaacgaggtggaaaccgcgcctctgctgggtgagcaacttgacctagaa
ggcagcgttgttgaagccgctagcgaagtacagacacctgtgactgagcaagaaacggtt
aaacaagaggctaacgaagtaactacagtcgccgaaactactgtgatcgaaaccacagtc
accgaaacgactgtcaccgaggaagcacctgctaaagcggctgccgaagaagcttctcaa
gaagagagcaagcctaagtcaagacgtcgtgcacctaaggccaaagtcgcttctgaagag
gaaacctctgtagaagaaactcagcagagcctaccactggcaggcgaggcgaaagccagt
ctgaaagaggaagttcaggcggaactggatctaaccagcacacctgaagaggttaaggcc
agccaggaagcggcgcctcaagttgatgacgtcgcagcgcagaccgaagagccagtggca
gtagaaactgcgccagtcgagacgcctgaagtcgaagttgaagctaagactgaaactgaa
gcgccagttactgaagcgcctgcagccaaagagagcagcgccgcctctgcccctatggca
aagccagcagccgtaccagccccaaccgctaaggtgaaacctgcggctaaagttgaggca
acgccagcagaggaaaagccagaagagaaggctagcgacgaggctgagaagcctgcgcct
aaggccaccagccgctttggttccatggtgagttctaccatgaccaaacctgaggtagaa
gccaggacgctcgtcgacaccccatcgggacgtcaatatgaagccacggcaaaagaagcg
tcggccgagccagtgaaacgcggtaacagcgcaaactcggaaatggcacgcccctaa
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