Salinibacter ruber DSM 13855: SRU_1758
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Entry
SRU_1758 CDS
T00312
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sru
Salinibacter ruber DSM 13855
Pathway
sru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SRU_1758 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sru03021
]
SRU_1758 (rpoB)
03400 DNA repair and recombination proteins [BR:
sru03400
]
SRU_1758 (rpoB)
Enzymes [BR:
sru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SRU_1758 (rpoB)
Transcription machinery [BR:
sru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SRU_1758 (rpoB)
DNA repair and recombination proteins [BR:
sru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SRU_1758 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ABC45879
UniProt:
Q2S1Q5
LinkDB
All DBs
Position
complement(2173447..2177454)
Genome browser
AA seq
1335 aa
AA seq
DB search
MAHGPAPPDDRHGSPCFRGPTHGIRTRAVRRVGCFANAVYSRERYLQPMPTFLNGDITTP
GHLVDPDPRESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPI
KDNRDRYTLEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLTSKEEEGGEEAIEAIEQ
EVYLGTLPFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKEIHSNGTELFSARVIPFRGSW
MEFSTDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEFEEHL
GRELATSVTIEKTIEIVDEDTGEVVDEEMEREVLLPAEHELEEGDWEELDEYDVSRLYLV
REDVEDEALDKSTLVETLQKDSSHTEEEALEVIYEKLRGSEAPDLDSAREALERLFFNED
RYDLGDVGRHRMNARLDVDVDTDEKVLTKEDVVGIVRELIRLQNGESTADDIDHLSNRRV
KSVGEQLGSQFSLGLARMARTIKERMNLRDADKFTPKDLVNARTIESVINTFFGTNQLSQ
FMDQTNALAEMTHKRRMSALGPGGLTRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLML
SLCVHSTINDFGFLETPYRVVEDGRVTDRVEYLSAEEEDQATVAQANAPIGDDGHFERDE
VRCRHQGDFPIVEPEEVDYMDVAPNQIVSPSASLVPFLSHNDANRALMGSNMQRQGVPLL
RSDSPIVGTGLEGRVAKDSRSCVVAEGEGVVEYVDAERLVVRYDEEQDKTDLTFGEPVQE
YELTKFRRTNQGTCMNQKPIVQAGDRVEEGEVLTDGFAMEKGELALGKNVLCAFMPWHGY
NYEDAIVISERLVADDVYTSVHIEEFEHEVRDTKRGEEELTREIPNVSEEATKDLDERGI
VRVGAEITPGDIIVGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKAKPGMEGGVVI
DTRLFSRRELDPASKKMEEKRLENIESDHERKLADLNERFWEKFFALVEDATSAGLEDRE
GEVLLTEGADFEEDAFDEVDPSDLSTRAEFTEDEELNDQISTLLRNYKSRRRDIEGTTKR
QKHQVEMGDELPSGVVQMAKVYVARKKKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDG
TPVDLVLNPLGVPSRMNLGQIYETLLGWAGDRLGVKYATPIFDGASLEDVGDELEKAGLP
RDGKVQLYDGRTGEPFDEKTTVGQIYMMKLEHLVEDKMHARSIGPYSLITQQPLGGKAQF
GGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGRSEAYESIVKGENLPSPGVPESFNV
LVRELQGLGLEVTLD
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggctcatgggcctgcgccccccgacgacagacatggatccccctgcttccgaggcccc
acgcacggtattcgcacccgtgccgtccggcgtgtcggatgttttgcgaacgcagtatat
tcacgcgagcgatacctacagcctatgccgacctttttaaacggagacatcaccaccccc
ggtcaccttgtggacccggatccgcgcgaaagctttgcggacattccggaggtgtgggat
tatccggacttcctggacgtccagctgaagacgttccacgactttgtgcaggacgacgtg
ccgcccgccgaccgggaggacgttggcctccaggcggtctttaacgagcacttcccgatc
aaggacaaccgggaccgctacacccttgagttcgtcaactacgagctcgacgccccgaag
cacacggtcgaggagtgcatcgcgcagggcctcacgtactcgattcccctgaaggccacc
ctccgcctcacgagcaaggaggaggaagggggcgaagaggccatcgaggcgatcgagcag
gaagtatacctggggacgcttccgttcatgaccgaccgcgggacgttcatcgtgaatgga
gccgaacgggtcatcgtctcccagctccaccgcagccccggtgcgttcttcgagaaggag
attcactcgaacggcacggagctgttcagtgcccgcgtgattcccttccgcggttcgtgg
atggagttctccacggacgttcgtgacgtgctgtgggcctacgtcgaccgcaagaagaag
gtgcccgtcaccacgctgcttcgtgcgctgggcttctccagcgacgaggagatcgtgaag
atgttcgatctggccgacgcggttgacatcggcgacgaagacgaattcgaagagcacctc
ggccgcgagctcgcaacgagcgtcacgatcgagaagacgatcgagatcgtcgacgaggac
accggggaagtggtcgacgaagagatggagcgcgaggtgctgctgcccgccgagcacgag
ctggaggagggggattgggaggagctcgacgagtacgacgtgagccgcctctatctcgtg
cgggaggatgttgaggacgaggcactcgacaagagcacgctcgtggaaaccctccagaag
gactcctcgcacacggaggaggaggcccttgaggtcatttatgagaagctgcgtgggagc
gaggcgcccgaccttgactctgcccgggaggcccttgagcgactcttctttaacgaggac
cgttatgacctgggcgatgtggggcgtcaccgcatgaacgcccggctggacgtcgacgtg
gacaccgacgagaaggtcctcacgaaggaggatgtggtcggcatcgtccgtgagctcatt
cgactccagaatggagagagcacggccgacgacatcgaccacctcagcaaccgccgcgtg
aagtccgttggcgagcagcttgggtcccagttctccctgggcctggcccgcatggcgcgc
accatcaaggagcgcatgaatctgcgggacgccgacaagtttacgccgaaggacctggtg
aacgcccggaccatcgagagcgtgatcaacacgttcttcgggaccaaccagctcagccag
ttcatggaccagaccaacgccctggccgagatgacccacaagcgccgcatgtcggcgctg
gggccgggcggcctgacccgcgaacgggccgggttcgaggttcgagacgtccaccacacg
cactacgggcggctctgtcccatcgagacgccggaggggccgaacatcgggctgatgctg
tccctctgcgtccactccacgatcaacgacttcggcttcctggaaaccccctaccgtgtg
gtggaggacggccgggtgaccgaccgggtcgaatacctctcggccgaagaggaggaccag
gccacggtggcccaggccaacgccccgatcggcgacgacggacacttcgagcgcgacgag
gtgcgctgccggcaccagggagacttccccatcgtcgagccggaggaggtcgactacatg
gacgtagcgccgaaccagatcgtctcgccctcggccagcctcgtgcccttcctctcccac
aacgacgcgaaccgcgcgctgatgggatcgaacatgcagcggcagggtgtgccgctgctc
cgaagcgactccccgatcgtcgggaccggtcttgagggacgggtggcgaaggactcccgc
tcctgcgtggtggcggagggcgagggcgtcgtcgagtacgtagacgcggagcgcctcgtt
gtgcgctacgacgaggagcaggacaagaccgacctaaccttcggcgaaccggtccaggag
tacgagctgaccaagttccgccggaccaaccagggcacatgcatgaaccagaagcccatt
gtccaggcgggcgaccgcgtggaggagggcgaggtcctcaccgatgggttcgcgatggag
aagggcgagctcgccctcggcaagaacgtgctctgcgccttcatgccctggcacgggtac
aactacgaggacgccatcgtcatcagcgagcgcctcgtggccgacgacgtgtacacctcg
gtccacatcgaggagtttgagcacgaagtgcgcgacacgaagcgcggtgaggaggagctg
acccgcgagattccgaacgtgagcgaggaggcgacgaaggacctcgacgagcggggcatt
gtccgcgtgggggccgaaatcaccccgggcgacatcatcgtcgggaagattacgccgaag
ggcgaaaccgaccccacgccggaagagaagctgctccgcgccatctttggggacaaggcc
ggcgacgtgaaggacgcctccctgaaggccaagccgggcatggagggcggtgtcgtgatc
gacacgaggctctttagccgccgtgagctcgacccggcctccaagaagatggaggagaag
cgcctcgaaaacatcgagagcgaccacgagcgtaagctggcggaccttaacgagcgcttc
tgggagaaattctttgccctggtcgaggacgcgacgagcgccggcctcgaagaccgtgag
ggcgaggtcctcctcaccgaaggcgcggactttgaggaagacgcctttgacgaggtcgac
ccgtccgacctgagcacccgtgccgagttcaccgaggacgaggagctgaacgaccagatc
agcacgctccttcggaactacaagtcgcgccgccgcgacatcgagggcaccaccaagcgc
cagaagcaccaggtcgagatgggcgacgagctgccctccggcgtcgtgcagatggcgaag
gtctacgtggcgcggaagaagaagattgaggtgggcgacaagatggccggacgccacggc
aacaagggcgtgatcgcgaagattgcgccggtcgaggacatgccgttcctcgacgacggc
acgcccgtggacctggtgctaaacccgctcggggtgccgtcccggatgaacctgggacag
atctacgagacgctcctcggctgggcgggcgaccggcttggggtcaagtacgcgaccccg
atcttcgacggtgcgtcgctcgaagacgtgggcgacgaactggagaaggccggcctcccc
cgcgacggaaaggtgcagctctacgacgggcgcaccggcgagccgttcgacgagaagacg
acggtgggccagatctacatgatgaagctggagcaccttgtcgaggacaagatgcacgcc
cggtccatcggcccctacagcctcatcacgcagcagccgctgggcggaaaggctcagttc
ggcgggcagcgccttggagagatggaagtctgggccctgtacgcctacggggcctccaac
acgttgcaggagatgctcaccttcaagtccgacgacgtcgagggccgctccgaggcctac
gagtcgattgtgaagggcgagaacctgccctcgcccggcgtccccgagagcttcaacgtg
ctcgtccgggagcttcaggggctcgggcttgaggtgacgctcgactaa
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