Serratia plymuthica S13: M621_00580
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Entry
M621_00580 CDS
T02716
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sry
Serratia plymuthica S13
Pathway
sry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M621_00580 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sry03021
]
M621_00580 (rho)
03019 Messenger RNA biogenesis [BR:
sry03019
]
M621_00580 (rho)
Transcription machinery [BR:
sry03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M621_00580 (rho)
Messenger RNA biogenesis [BR:
sry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M621_00580 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AGP42530
UniProt:
S4YDI8
LinkDB
All DBs
Position
139685..140944
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgtatgcgcaagcaggacattatcttctccatccttaag
cagcatgcgaaaagtggagaagatatcttcggcgatggcgtgttggagatattgcaggat
ggatttggtttcctccgctctggagacagttcctaccttgcaggccccgacgacatctac
gtatcccctagccaaatccgccgtttcaacctccgtacaggtgactccgtttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgttgaaagtcaacgaagtcaac
tacgacaagccggaaaacgcccgcagcaagatcctgttcgagaacttaaccccactgcat
gccaactcccgtctgcggatggaacgcggcaacggttcaaccgaagacctgacagcccgc
gtgctggacctggcttctccgattggccgtggtcagcgtggtctgattgttgctccaccg
aaagccggtaaaaccatgctgctgcagaacattgcgcaaagcatcgcttacaaccatcca
gactgcgtgctgatggtgctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgtctggtgaagggtgaagtcatcgcctctacctttgacgagccggcttcccgtcacgtc
caggttgcggaaatggtgatcgaaaaggccaagcgcctggttgagcacaagaaagacgtt
atcatccttcttgactccatcacccgtttggcgcgtgcctacaacaccgtggtcccggct
tccggcaaagtgctgaccggtggtgtggatgccaacgccctgcatcgtcctaagcgtttc
ttcggtgcggcacgtaacgttgaggagggcggtagcctgaccatcatcgctaccgcgctg
gtagataccggttccaaaatggacgaggttatctacgaagagttcaaaggtaccggcaac
atggaattgcatctggcgcgtaaaatcgccgagaagcgcgtattccctgcgatcgactac
aaccgctccggtacccgtaaagaagagttactcaccacgtctgaagaactgcaaaaaatg
tggatcctgcgtaaaatcattcacccgatgggcgagattgatgcgatggagttcctcatt
aacaagttggccatgaccaagaccaacgatgaattcttcgatatgatgaagcgctcataa
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