Sus scrofa (pig): 100517188
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Entry
100517188 CDS
T01009
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
ssc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100517188
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100517188
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100517188
09142 Cell motility
04820 Cytoskeleton in muscle cells
100517188
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100517188
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100517188
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100517188
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100517188
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100517188
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100517188
Hyaluronan
Extracellular matrix or blood plasma proteins
100517188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
KR
Motif
Other DBs
NCBI-GeneID:
100517188
NCBI-ProteinID:
XP_020927155
LinkDB
All DBs
Position
13:complement(2259260..2393306)
Genome browser
AA seq
2439 aa
AA seq
DB search
MPASPPAAPGPRSPQTRAHHALGAPLSAAGDARVASGAQEGPTRRVTLDPPPFLGPQFTA
LVSSRGPPRSSLPVEPQAPRTPNSAPDSPPRLCWKAAAPGPPPWLSAKGGARLRLHPGGG
VAAAGPKPPRSPTPAPAFWNGDWDDVLGIIFLATSFGFIKSQRTVCREASVGDVVFLVDT
SISPQNTRSVRGFLSMVVNGFNISKEAIRVGLAQYSHEPQSEFLLSTYHRKGEVLRHIQR
FPFMPGGHKMGLALQFLLDHHFQETAGSRASQGVPQVAVVISASPTEDQVQEPAEAFRSA
GIQLFAVGVGDAVPGELREIASSPSEKFVSFVSNFSGLGSLAPKLRQQLCDTLTKAAPPV
DHVSPACREAALADIVFLVDSSTSIGPQNFQKVKNFLHSVILGLDISSDQVRVGLAQYND
NIYPAFQLNQYPLKGVVLEQIRNLPYRTGGTNTGSALEFIRTNYLTEAAGSRAKDGVPQI
VILVTDGESNDEVQEAADKLKEDGVVVYVVGVNVQDVQELQTIASEPLEKFLFNTENFNI
LQDFSGSILQTLCSAVEGKIKESAQRYADVVFLADTSQNTSQTSFQWMQNFISRVVGMLD
IGRDKYQIGLAQYGAQGHTEFLLNTYWTXDEMMAHIREHFVPRGGSRRTGKALRYLHQTF
FQEAVGSRFLQGVPQYAVVITAGKSEDEVRDAAQTLREKGVRVMSVGVQDFDKRELEEMG
TLPLVYEIQGQESIRQVMQDVSEVIQGTGKLETKNEAEKEPVMACPTAIPADLVFLIEEF
SRAGQSNFQLVVSFLKTTIGSLSIHPDVVRVGLVFYSDEPRLEFALDAFQNPAQILEHLD
KLAYRERRGKTKTGTALGFLREKVFIREKGSRSEQGVQQVAVVITESFSQDNVSRPASLL
RRAGVTIYAVGIQHDSESMDLEKIASYPPWKHVIPLDYLQLANVGSKIKNQLCPEIVGTR
AFVSGMGRALQEGCVHIEKADIYFLIDGSGSIFHNDFLEMKVFMNEVIKMFHIGPDRVQF
GVVQYSDEINSQFTLNQHPSVERLKVAIDGIQQKGGGTMTGQALGNMVKIFADTARSNVP
WYLIVITDGQSMDPVAEAAEALRGDGVTIYAIGVRDANTVELREIAEDRMFFVHDFDSLK
AIQQEVVQDICSSETCKNRKADIIFLMDGSESISSKDFEKMKDFMKRMVNQSNIGADEIR
IGLLQFSSNPQEEFRLNQYSSKVDIHRAISNVKQISDGTYTGKALRFTLPFFGSSRGGRP
SVPQYLIVITDGVAHDNVAVPAQALRDRNIIIFAIGVGEAKNAQLLEITNDQSKVYYEEK
FDSLQNLEKEILYRVCIPQGCNVDLSVGIDLSTPTRQVQQRLQGLLPELMQELAMLSNIS
CGVPGQTNVMLRYLVPGLKGQLIFDSGFEKYSDEAIQKFLIHQAASSNHMDADFLHSLGN
NAIRLSSARVKVLLVFTDGLDDDLERMKETSELLRKKGFSGLLTIGLEGVHKLEELQELE
FGRGFAYTQPLSITLQSLPSIVLKQLDTIVERTCCNIYAKCFGEDGHRGDAGGPGRKGER
GVDGLPGHPGEEGAHGERGPRGLPGLRGDEGCRGMRGPKGARGFSGEKGSPGEEGPDGLD
GEPGDRGVPGSSGEKGDRGNRGLTGPPGQRGERGEPGLRGDPGDPGIDGFIQGPKGEKGR
RGHQGSSSIDGPQGETGNAGPQGSRGRQGLPGLKGVHGESGEWGYQGEQGFPGSQGQRGR
QGPPGTSGEKGLVGAQGNPGPRGPKGSKGKDGPRGMKGELGDAGERGLLGRQGPRGQPGL
SGPDGYGHPGSKGTKGDPGFPGYPGAQGEDGDPGHPGEKGAKGTRGKRGNAGLPGFAGTP
GDPGPPGPVGIKGPKGLVDMTLCEIISLARENCPCSTGVSKCPLFPTEVVFALDVSDDVS
QLDFERMRDILLSLLMKMEISGSNCPTGAWVAIVSYSSKTDYLVRFSDHKGRTTLLQAVR
GLTLARSSGTRNLGDAMRFVVRHVFKRVRSGHLLRKVAVFFQVGWTQDAGSISTAVLELS
ALDVIPVVITFTEGHNLPDALLMNGTNRFRLYVWETEGQQDVEHMARCTLCYDQCLPAPE
CGWDASGPLAVDVDVAFVVDSSHGVDASFYRAALTLVDAVLDDVEVAVQPSATPHGARVA
LVTYTTLGFWPGAQQPPVREGFHLTSYGHRTQMQRRVHEAAGHXLAGAPALGHALEWTLE
RVLLTAQLPGRAQVLLAIVASKTSSWDQEKLRTLSLEAKCKGIILFVLALGPGLGTRELE
ELARVASAPSEQHLLHLEGISDQEMAYARGFTRAFLNLLKSRTNQYPPPELTEECGGLSR
GDTLLLRRQQQQLLPERLPRSRFGRSALASDLEALQATDSFLEETRKATKTSITQHSKGA
LENDEKSGYNAEENEQEKPAQPKETEKKEIQALPMILVP
NT seq
7320 nt
NT seq
+upstream
nt +downstream
nt
atgccagccagcccgcccgcggctccggggccgcggtccccacagactcgcgcacaccat
gcgctcggagcccccttgagcgctgcgggagacgcacgcgtggcctcgggcgctcaggaa
ggccccacccgccgagtgaccttggatcctccgcccttcttggggcctcagtttaccgcc
ctggtctccagccgagggcctccccggagctcgctgcctgtggagcctcaggcccctcgc
acacccaactcagcccccgactccccgccccgcctatgctggaaggctgccgctccggga
ccgccaccatggctgagcgccaagggtggagcgcgcctccgcctccacccgggcggagga
gtagcagctgcaggaccgaaaccgccaaggtcgccaaccccagcgcccgctttctggaat
ggagactgggacgacgttttggggatcatcttccttgcgactagttttggtttcatcaaa
tcacagagaactgtgtgcagggaggcctctgtgggagacgtcgtgtttttggtggacacc
agcatcagcccccaaaacacccgcagtgtgcggggcttcttgtctatggtggtcaatggc
ttcaacatcagcaaagaggcaatccgcgtggggctggcccaatacagccacgagccccaa
tctgagttcctcctttccacctaccaccgaaaaggcgaagtgctgagacacatccagagg
tttccatttatgcctgggggccacaagatgggtttggccttgcagttccttctggatcac
cacttccaggaaaccgcagggagccgggcaagccagggcgtgcctcaggttgccgtggtg
atcagcgcaagcccaacagaggaccaagtgcaggagcctgctgaggccttcaggagtgca
ggcatccagctcttcgcggttggcgttggagatgcggttccaggggagctcagagagatt
gctagcagcccttcggagaagtttgtctcctttgtgtccaacttctctggtctgggcagt
ctcgcccccaagcttcggcagcagctttgtgatactttgacgaaggcagctccaccggtt
gaccatgtctctccagcttgcagagaagcagccctggcagacatcgtcttcctagtagac
agctcaaccagcattggaccccagaacttccagaaggtgaagaacttccttcactctgtc
atcttggggcttgacatcagcagtgaccaggtccgagtgggacttgctcagtataatgac
aacatctacccagcttttcagctgaaccagtaccctctaaagggtgtggtcctagagcag
atccggaacctgccctatcgtacgggaggtacaaacaccgggagcgccctggagttcatc
aggaccaactacttgacggaggcagccggcagtcgggccaaggacggggttcctcagata
gttatcctggtgacagatggggagtcaaatgatgaggtccaagaggcagctgacaagttg
aaagaagatggggttgttgtgtacgtggtaggagtcaacgtccaggatgtccaggagttg
caaacaatagccagtgagccactggagaagtttctcttcaatactgagaacttcaacatc
ttgcaggatttctctggaagcattctccagactctttgctcagcagtagagggcaagatc
aaagaatctgcccagcgctatgcagatgtggtctttcttgctgacacctcacagaacaca
tcacagaccagtttccagtggatgcagaatttcatctccagagtggttggcatgctggat
attggcagggacaagtatcagattgggctggctcagtatggtgctcaaggtcacactgaa
tttttgctcaacacctactggaccncagatgagatgatggctcacatccgtgaacacttt
gtgccccggggaggttccaggaggacaggcaaagctctgcgatacctccatcagaccttc
ttccaggaggcagtgggaagccggtttctccagggtgttccccaatatgcagtggtcatt
actgcaggcaaatctgaggatgaggtccgcgatgctgcacagacattgagggagaaaggc
gtgagagtcatgtctgtgggtgttcaagactttgacaagagagaacttgaggagatgggg
acactaccccttgtatatgagatacaaggacaggaaagcattagacaggtgatgcaggat
gtgagtgaggtgatccaagggactgggaagctcgagaccaaaaatgaagctgagaaggag
cctgtaatggcatgcccgactgctattccggccgacctagtattcctcattgaggaattt
agcagggctgggcaatcgaatttccaactagtcgtcagtttcttgaagaccaccattggc
tctctaagtattcatccggatgttgtgagagttggcttggtcttttacagtgacgaacca
cggctggagtttgcactggatgcatttcagaatccagctcaaatcttggagcatctggac
aaattagcctatagggaaagaagaggaaagaccaagactggcactgctttgggtttccta
agggagaaggtgttcattcgggagaagggcagcaggtctgagcaaggtgtgcagcaggtg
gctgtggtcatcacggaaagcttctcccaggacaacgtgtccagaccagcttccctgctc
cgaagggcaggagtgaccatctacgcagtgggcatccagcatgactcggagagcatggac
ctggaaaagatagcatcatatcctccttggaaacatgtcatccccctggattatttgcaa
ctggccaatgtgggaagcaagattaagaaccagctctgccctgagattgtgggcacaagg
gccttcgtgtcagggatgggccgtgccctacaagaaggctgtgtgcatattgagaaagca
gacatttacttcctcattgatgggtctggcagcatcttccacaatgattttttggaaatg
aaggtgttcatgaatgaagtgataaagatgttccatatcgggcctgacagagtacagttt
ggagttgttcagtactcagatgaaatcaatagtcaatttacccttaaccagcatcccagt
gtggaaaggctgaaggtggccatcgatggcatccagcagaagggaggtggaaccatgaca
ggtcaggctttaggtaacatggttaagatatttgcagacactgctcgcagcaacgtgcct
tggtatctcatcgtcatcactgatggccaatctatggacccggtggctgaggctgcagag
gcattgaggggagatggagtcaccatttacgctattggagtcagagatgctaacactgtt
gagcttcgagagatagctgaagacagaatgttttttgtgcatgattttgattccttgaag
gccatccaacaagaagtggtacaggacatctgctcctcagagacctgtaagaataggaaa
gctgacattatcttccttatggatggttcagaatccatctcctcaaaagactttgaaaag
atgaaggatttcatgaagcgaatggtgaaccagtctaatattggtgctgatgaaattcgg
attggccttctgcagttcagctcaaacccccaggaagaattcaggctcaaccaatactcc
tcaaaagtggacattcacagagccatctcaaatgttaagcaaatcagtgatggcacctac
actgggaaagccttgcgcttcactctgccgttttttggcagttctagaggagggaggccc
agtgttcctcagtatttgattgtgatcactgacggggtcgcccacgacaatgtagccgta
ccagcccaggctctcagggacagaaacataattatttttgccattggggtaggagaagcc
aaaaacgctcagcttttggagatcactaatgaccagagcaaagtgtactatgaagaaaaa
tttgactccctgcaaaacctggagaaggaaattctttacagggtctgcattccgcaagga
tgcaatgtagacttgtctgtaggaattgatctctccactcccacgaggcaagttcagcag
aggcttcaagggttactgccagagctgatgcaggagctggctatgctttccaacatcagc
tgtggcgttcctggtcagactaacgtgatgctccgctacctggttcctggcttaaaaggc
cagcttatctttgactcgggttttgaaaagtacagtgatgaggccattcagaagttcttg
attcatcaggctgccagtagcaaccatatggatgcggattttttgcattctctgggaaat
aatgctatccgtctttcttctgccagagtgaaggtccttttagtgtttacagatggactg
gatgatgatttagagcgaatgaaagaaacatctgagcttctccgaaaaaagggattctct
ggactcctaactattggccttgaaggtgtccataaattagaagagctccaggagctagaa
tttggcagaggatttgcatacactcaacctctaagcatcacactgcaatccctccccagc
atcgtactgaagcaacttgacacaattgtggaaagaacatgctgtaatatatatgcaaag
tgctttggagaagatgggcacagaggtgatgctgggggcccagggaggaagggagagagg
ggtgtggatgggttacctggtcatcctggtgaagaaggtgctcatggagaaagaggcccc
cgaggtcttcctggactccgaggtgatgaaggatgccggggtatgagagggcccaaggga
gcaagaggattttcaggagaaaagggcagccctggtgaggaaggtcctgatggcttggat
ggagaaccgggtgatcgtggagtcccagggtcatctggagaaaaaggagatcgaggaaac
aggggtttgacggggccacccggacaacgtggtgagcgtggagagcctgggctaaggggc
gatcctggggatcctggaattgatggtttcatccaaggccctaagggtgaaaaaggaagg
cgtggacaccagggaagttctagtattgatggacctcagggggaaaccggcaatgctggc
cctcagggttcaagaggaagacaaggtctgccggggctgaagggtgtgcatggagaatct
ggtgaatggggttaccaaggagagcaagggtttccaggctcacagggacagagaggaagg
caaggaccaccaggaacttctggagaaaaaggcttagtcggtgcccaggggaatcccggg
cctcgagggccaaaaggttcaaaaggaaaagatggaccaagaggaatgaagggagagctt
ggtgatgcaggagaaagaggactgctgggtcgacaaggaccaagagggcaacctggtctt
tctggtccagatggatatggacatccaggaagcaaaggaacaaagggtgaccctggattt
cctggctaccctggcgcacaaggagaagatggtgacccaggccacccaggagagaagggg
gcaaagggaaccagagggaagaggggtaatgctggacttcctggatttgctggaactcct
ggtgacccaggccctccaggaccagtgggcatcaagggccccaaaggtttggtagatatg
acgctttgtgaaatcatcagtcttgctcgagaaaactgcccttgttcaacaggtgtttcc
aaatgcccactgttcccgactgaggtggtcttcgccttggatgtgtcagatgatgtctcc
cagttggattttgagaggatgagggacattttactgtctctgttgatgaagatggaaatc
agtgggagtaattgccccacgggtgcctgggtggctatcgtctcctatagcagcaaaaca
gactacctggttcgcttctctgaccacaaggggaggaccaccctcctgcaggcggtcagg
ggactcaccctagccaggtcctctggcacaaggaaccttggggatgccatgaggtttgtg
gtgagacatgtgttcaagcgtgtgcgctcaggccatctgctgaggaaggtggcagtgttc
ttccaggtgggctggacccaggatgcaggttccatcagcaccgctgtacttgaactcagt
gccctggatgtcatccctgttgtcatcacatttacagaggggcataacctcccggatgcc
ttgttgatgaatggaaccaacagatttcgtctttacgtctgggagacagagggccagcaa
gatgtagagcacatggcccgctgcacactctgctatgaccagtgcctcccagcccccgag
tgtgggtgggacgcatcggggccgctggctgtggatgtggacgtggccttcgtggtggac
agctcccatggagtggacgccagcttctaccgtgctgccttgactctggtggatgctgtg
ctggatgacgtggaggtggctgtgcagccgagtgcaaccccccatggggcccgcgtggcc
ctggtgacgtacacgacccttggcttctggccgggtgcccagcagccccctgtgcgtgag
ggcttccacctgacctcctacggccaccggacgcagatgcagaggcgtgtgcatgaggcc
gcaggccacncccttgcaggagcccccgccctgggtcatgccctggagtggacactggag
agggtgctcctgacagcccagctgcccgggagggcgcaggtcctccttgccatcgtggcc
agcaagaccagcagctgggaccaggagaagctaaggactctgtccttggaggccaagtgc
aaaggcatcattttgtttgtgctggccttgggcccgggcttggggacccgcgagctggag
gagctggctcgtgtggccagtgccccctccgaacagcatctcttgcacctggaggggatc
tcggatcaggagatggcctatgcccgaggcttcactcgggccttcctgaatctcctaaaa
agtagaacaaaccagtacccacccccagagctcactgaagagtgtgggggcctgagccga
ggggacactctgctattgaggaggcagcagcaacaactcctgcctgagaggttgcccagg
agccggtttggcagatctgcccttgccagtgatttggaagcacttcaagcaacagactct
tttctagaggagactagaaaagccacaaagacatctatcactcagcactcgaaaggggca
ctcgaaaatgatgaaaagagtggctacaatgctgaagaaaatgagcaggaaaagcctgca
caaccaaaagaaactgaaaagaaagaaattcaggcactgcctatgatccttgttccctag
DBGET
integrated database retrieval system
