Sus scrofa (pig): 100739449
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Entry
100739449 CDS
T01009
Symbol
POP1
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100739449 (POP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssc03009
]
100739449 (POP1)
03016 Transfer RNA biogenesis [BR:
ssc03016
]
100739449 (POP1)
03029 Mitochondrial biogenesis [BR:
ssc03029
]
100739449 (POP1)
Enzymes [BR:
ssc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
100739449 (POP1)
Ribosome biogenesis [BR:
ssc03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
100739449 (POP1)
Transfer RNA biogenesis [BR:
ssc03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
100739449 (POP1)
Mitochondrial biogenesis [BR:
ssc03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
100739449 (POP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POP1_N
POPLD
GCV_T_C
Motif
Other DBs
NCBI-GeneID:
100739449
NCBI-ProteinID:
XP_003481423
Ensembl:
ENSSSCG00000006078
UniProt:
F1S0M3
A0A4X1U071
LinkDB
All DBs
Position
4:complement(38608536..38656204)
Genome browser
AA seq
1003 aa
AA seq
DB search
MSNAKERKHAKKMRNQPTNVTLSSGFVADGGVKHHSGGGKPFQAQKDPHSGTSRQWHART
SHHALAESDAKEQSSSKVTFRKKGGWKAGPEGTSQDIPKYITASTFAQARAAEISAMLKA
VTQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKTKCHKA
RRCHMNRMLEFNRRQKKNIWLETHIWHAKRFHMVKRWGYCLGERPTAKSHRACYRAMTSR
CLLQDLSYYCCLELKGKEEEILKALSPMCSIDTGLTFAAVHCLSGKRQGSLMLYRANKYP
QEMLGPVTFIWKPQGTPADTSESRQLWIWLHPTLKQDILEEIKAACQCMEPTKSAVCIPD
SLLTPSQEKGQTEKIGRKRKWEDDGENAEPIKKIIGDGTRDPLQPYSWLSPTTGIMISDF
TMEMNRFRLIGPLSHAILTEALKAASVHTEGEDTEKTPHRWWIETCKNPDSVSLHHRQEG
IFGLLGGITSPAEIPAGTVLGLTVGDPRINLPQKRSRVLPNPEKCQDNEKVRQLLLEGVP
VECSHSFLWNPDICKSVTENKISDQDLNRKRSELLVPGSQLLLGPHESKVPILLIQQPGK
ATGDDQRGWGSGWDVLLPKGWGMAFWIPFIYRGARVGGLKETVMHSQYKGSPNVPGDFPD
CPAGVQFAQEQAKNLLEKYTRRPPAKRPNYVKLGTLAPFCCPWEQLTRDWESRVQAREES
PAIPSPGGEESGPRRDVVPCAPTAQRTLQLSDDAGTSLNDADMMDTDCPAPAGTKWVAGR
GAPRSLLCVVRSRKLLRQLSAWCGDSRAAQRAPGRGQQDLTREACLSISDRFPRALVWVR
LSLLSKGSPEPHTMICVPAEEDLLQLSRDRLYRGPQESKHSDPFKSKIRKQKEQKKREKR
QSPGPAAAEGLAEGDPPGHQALTLGLWSGPLPVVTSHCSRVLLGFVTQGDFSMAVGCGAA
LGFVSLTGLLDMLSSQPGAERGLVLLRPPASLQYRFARIAIEV
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatgccaaagaaaggaaacatgctaagaaaatgagaaaccagcccaccaatgtg
actttatcctctggctttgtggccgatggaggtgtaaagcaccatagtggaggcggaaaa
cctttccaggctcaaaaagatcctcactctggaacctcacgacagtggcacgccagaacc
tcccaccatgccctggctgagtctgatgcgaaggagcagtcttcctccaaagtaaccttt
aggaaaaagggaggatggaaagcaggtcccgagggcacttctcaggacattcccaagtac
atcaccgcttctacttttgctcaagcccgagctgctgaaatcagtgccatgttgaaagca
gtgacgcagaagtcttccaattcactggtcttccagactctgccacggcacatgagacga
agagccatgagccacaatgtcaaacgcctgcctcgacgcctacaggagattgcccagaaa
gaggcagagaaagcagttcaccagaaaaaagagcactcaaaaactaagtgccataaagct
cgacgatgtcacatgaatcggatgctagagttcaaccgaagacaaaagaagaacatatgg
ttagaaactcacatctggcacgcgaagcggtttcacatggtcaagaggtggggctactgc
ctgggagagaggccgacagccaagagccacagagcctgctatcgagccatgacgagccgc
tgcctccttcaggatttatcctactactgttgtttggagttgaagggcaaggaagaagag
atactgaaggcactttctccaatgtgcagcatagacacaggattgactttcgcagcagtt
cactgtttgtctggaaagcgccaaggtagtctcatgctttaccgggcaaataaataccct
caggaaatgctggggcccgtgacatttatttggaagccccaggggacccccgccgacact
tctgagagcaggcagttgtggatctggcttcacccaactcttaaacaggatatcttagag
gaaataaaagccgcgtgccagtgtatggaacccaccaagtcagctgtctgcatccccgat
tcccttctgacaccgtcccaagaaaaaggccaaacggagaaaattggtaggaagagaaaa
tgggaagatgatggagaaaatgctgaaccaattaagaaaatcattggtgatggaactaga
gacccacttcaaccatattcttggctgtctccaaccacaggcattatgatcagtgatttc
acaatggagatgaacagattccggctgattggtccactttcccatgccatcctaactgag
gcattaaaagctgcttctgtccacaccgagggggaggacacagagaagacacctcaccga
tggtggattgaaacctgtaagaatcctgatagcgtttcccttcatcacagacaagaaggc
atttttggactgttgggaggaattacatccccagcggaaatcccggcaggtactgttctg
ggactgacggttggtgatccacgaataaatctgcctcaaaagaggtccagagtgttgccc
aatcccgaaaaatgccaagataatgagaaagttagacagctgcttctggagggtgtgcct
gtggagtgttcgcatagctttctttggaacccagatatctgtaagagtgtcacagagaat
aaaatctcggatcaggatttaaaccggaagaggagcgagttgctggtgcccggatcacag
cttcttttaggtccccatgagtccaaggttcctatactactgattcaacagccaggaaaa
gcgactggtgatgaccagcgaggctggggaagtggctgggacgtcctgctcccaaagggc
tggggcatggctttctggattccttttatctatcgaggtgcacgagtcggaggattaaaa
gagactgtaatgcattctcagtataaagggtcacccaatgttccaggtgatttcccagat
tgtcctgctggagttcagtttgctcaggagcaggctaagaatcttctggaaaagtacaca
agacgccctcctgccaaacggcccaattacgttaagcttggcactctggcacctttctgc
tgtccctgggagcagttaactcgagactgggaatcaagggtccaggcccgggaggaatca
ccggcaattccctctccagggggtgaggagagtggccccaggagagacgtggtgccttgt
gctcccacagcccaaaggactctgcagctctctgatgatgcgggcacatccctaaacgac
gcagacatgatggacacagattgtccagccccggcggggaccaagtgggtagcaggccgg
ggtgccccccgtagtctcctctgcgttgtgaggagcagaaagttactgaggcagctgtca
gcctggtgtggggacagtcgggcagcccagcgagctcctggcagagggcagcaggacttg
accagagaggcctgcctgtccatctcggaccgcttcccccgggccctggtgtgggtcagg
ctgtccctgctcagcaagggcagccccgagccgcacaccatgatctgtgtcccagccgag
gaggacctcctccagctcagccgggatcggctctaccgtgggccccaggaatccaagcac
agcgaccccttcaagagcaagatccggaaacagaaggagcagaagaaaagggagaagagg
cagagcccagggcctgctgcagccgaaggcctggccgagggggacccccctgggcaccag
gctctgaccctgggcttgtggtctggcccgctcccggttgtgacttctcactgttccaga
gtcctcctgggctttgtcacacagggagacttttccatggctgttggctgtggagcggcc
ctggggtttgttagtttgacgggcctgctggatatgctgtccagccagccgggagcagag
aggggcctcgtgttactgaggccgcctgcctctctgcagtatcgatttgcaaggatcgct
attgaggtgtga
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