Sus scrofa (pig): 102167672
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Entry
102167672 CDS
T01009
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X19
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03082
ATP-dependent chromatin remodeling
ssc04714
Thermogenesis
ssc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102167672 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102167672 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102167672 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
102167672 (SMARCA4)
03036 Chromosome and associated proteins [BR:
ssc03036
]
102167672 (SMARCA4)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102167672 (SMARCA4)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
102167672 (SMARCA4)
Chromatin remodeling factors
BAF complex
102167672 (SMARCA4)
PBAF complex
102167672 (SMARCA4)
GBAF(ncBAF) complex
102167672 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Htt_C-HEAT
Motif
Other DBs
NCBI-GeneID:
102167672
NCBI-ProteinID:
XP_013850145
Ensembl:
ENSSSCG00000013629
Vega:
OTTSUSG00000003518
UniProt:
A0A480YYJ9
LinkDB
All DBs
Position
2:69717175..69810301
Genome browser
AA seq
1617 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKVRPEKAENAEGQT
PAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSD
SEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDD
EYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGI
LADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKG
SPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV
LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL
NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV
LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY
RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG
MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ
NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ
DEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIK
DDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKS
SRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAV
IKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVM
LLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESES
RSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccacctctgggcggaacacctcggccaggcccttccccgggcccg
ggcccctcccctggagccatgttgggccctagcccggggccctctcctggctccgcccac
agcatgatggggcccagcccggggcctccctcagcaggacaccccatcccgacccagggg
cctggagggtaccctcaggacaacatgcaccagatgcacaagcctatggagtccatgcat
gagaagggcatgtcggatgacccccgctacaaccagatgaaggggatgggcatgcggtca
gggggccacgcagggatggggcccccgccgagccccatggaccaacactcccaaggttac
ccctcgcccctgggcggctctgagcatgcctccagcccggttccagccagcggcccatcc
tcaggcccacagatgtcgtctggtccaggaggggccccgctggatggtgccgacccccag
gctttgggacaacagaaccggggccctaccccatttaaccagaaccagctgcaccagctc
agagcccagatcatggcctacaagatgctggcccggggacagcccctccctgaccacctg
caaatggcagtccagggaaagcggccgatgcctgggatgcagcagcagatgccaacacta
cctccaccctccgtgtccgcaacaggacctggccctggccccggccctggccccgggccg
ggtccgggaccagcacctccaaattatagcaggcctcacggtatgggagggcccaatatg
cctccaccaggaccctcaggcgtgccccctgggatgcctggccagccccccggagggcct
cccaagccctggcctgaaggacccatggcgaatgctgctgcccccacgagcacacctcag
aagctgatccccccacagccaacgggtcgcccctctcctgcaccccctgctgtcccacct
gctgcctcccccgtgatgccgccccagacacagtcgccggggcagccagcccagcctgcc
cccatggtgccactccaccagaagcagagccggatcacccccatccagaagccgcggggc
ctggaccctgtggagatcctgcaggagcgggagtacaggctgcaggctcgcatcgcacac
cgaattcaggaacttgaaaaccttcccgggtccctggccggggatttgcgaaccaaagcg
accattgagctcaaggccctcaggctcctgaacttccagaggcagctgcggcaggaggtg
gtagtgtgcatgcggagggacacagccctcgagacggccctcaatgccaaggcctacaag
cgtagcaagcggcagtccctgcgcgaggcccgcatcaccgagaagctggagaagcagcaa
aagattgagcaggagcgaaagcgccggcagaagcaccaggaatacctcaacagcattctt
cagcatgccaaggatttcaaagaatatcacagatcagtcacaggcaaaatccagaaactc
acaaaggcggtggccacttaccacgccaacacagagcgggaacagaagaaggaaaacgaa
agaatcgagaaggagagaatgcggaggctcatggctgaagacgaggaagggtaccgcaag
ctcatcgaccagaagaaggacaagcgcttggcctacctcttgcagcagacggatgagtat
gtggcgaacctcacggagctggtgcggcagcacaaggctgcccaggtcgccaaggagaag
aagaagaaaaagaaaaagaaggttcgccccgagaaggcagaaaacgcggaaggacagaca
cctgcgatcggacctgatggtgagcctctggacgagaccagtcagatgagtgacctgcca
gtgaaggtgatccacgtggagagtgggaaaatccttacgggtacagacgcacccaaagca
gggcagctggaagcctggctggaaatgaacccggggtatgaagtagctccaagatctgat
agtgaagagagtggctcagaagaagaggaggaggaggaggaggaagagcagccgcagcca
gcacagcctcccactctgccggtagaagagaagaagaagattccagatccagacagtgat
gatgtctctgaggtggacgcccggcacatcattgagaatgccaagcaagacgttgatgat
gagtatggcgtgtctcaggcccttgctcgtggcctgcagtcctattatgctgtggcccac
gccgtcaccgagagggtagacaagcagtcagcgctcatggtcaatggtgtcctcaagcag
taccagatcaaaggcttggagtggctggtgtccctgtacaacaacaacctgaacggcatc
ctggccgatgagatgggcctgggcaagaccatccagaccatcgcgctcatcacgtacctc
atggagcacaagcggatcaacgggcccttcctcatcatagtacctctctcaacgctgtcc
aactgggcatacgaatttgacaaatgggccccctccgtggtgaaggtgtcatacaagggc
tctccagcagccagacgagcttttgttcctcagctccggagcggcaagttcaacgttttg
ctgaccacatacgagtatatcattaaagacaagcacatccttgcaaagatccgctggaag
tacatgatcgtggacgaaggccaccgcatgaagaaccaccactgcaagctgacgcaggtc
ctcaacacgcactacgtggccccccgccgcctgctgctgacgggcacaccgctgcagaac
aagctgcctgagctctgggcactgctcaacttcctgctgcccaccatcttcaagagctgc
agcacctttgaacagtggttcaatgcaccctttgccatgactggggaaaaggtggacctg
aacgaggaggaaaccattctcatcatccgtcgtctccacaaagtgctacggcccttcctg
ctccggcggctcaagaaggaagtcgaggctcagttgcctgaaaaggtggaatacgtcatc
aagtgcgacatgtccgccctgcagcgcgtgctctaccggcacatgcaggccaagggggtg
ctgctgaccgatggctctgagaaggacaagaagggcaaaggtggcaccaagacactgatg
aacaccatcatgcagctgaggaagatctgcaaccacccgtacatgttccagcacatcgag
gagtccttttctgagcacttgggctttactggcggcatcgttcaagggctggacctgtac
cgagcctcggggaagtttgagctgctcgacagaattcttcccaaactccgtgccaccaac
cataaagtgctgctgttctgtcagatgacctccctcatgacgatcatggaagactatttt
gcgtatcgcggttttaaatacctcaggctcgatggaaccacgaaagcggaggaccggggc
atgctgctgaaaaccttcaacgagcccggctccgagtacttcatcttcctgctcagcacc
cgggctggggggctcggtctgaacctccaatcggctgacactgtgatcatattcgacagt
gactggaacccccaccaggacctgcaagcgcaggaccgtgcccaccgcattgggcagcag
aatgaggtgcgcgttctccgcctttgcacggtcaacagcgtggaggagaagattctggct
gcagccaagtacaagctcaacgtcgaccagaaggtgatccaggccggcatgttcgaccaa
aagtcctccagccacgagaggcgtgccttcctgcaggccatcctcgagcatgaggagcag
gatgaggaagaagacgaagtgcctgacgatgagacggtgaaccagatgattgcccggcat
gaggaggagttcgacctgttcatgcgcatggacctggaccgcaggcgtgaggaggctcgc
aaccccaagcggaagccgcgcctgatggaggaggatgagctcccctcgtggatcatcaag
gacgacgccgaggtggagcggctgacctgtgaggaggaggaggagaagatgttcggccgc
ggctcccgtcaccgcaaggaggtggactacagcgactctctgactgagaagcagtggctc
aaggccatcgaggagggcacgctggaggagatagaagaggaggtccggcagaagaaatca
tcacggaagcgcaagcgagacagtgatgccggcccctccaccccgaccaccagcacgcgc
agccgcgacaaggatgacgagagcaagaagcagaagaagcgtggccgtcctcccgccgag
aagctctcccccaacccacccaacctcaccaagaagatgaagaagatcgtggatgctgtg
atcaaatacaaggacagtagtggacgtcagctcagtgaggtgttcatccagctgccgtcc
cgaaaggagctgcctgagtactatgagctcatccgaaagcctgtggacttcaagaagata
aaggagcgcatccgcaaccacaagtaccgcagtctcaacgacctggagaaggacgtgatg
ctgctgtgccagaatgcgcagaccttcaacctggaggggtctctgatctacgaagactcc
attgtcctgcagtcggtcttcaccagtgtgcggcagaaaatcgagaaggaggatgacagt
gaaggggaggagagcgaggaggaggaggagggcgaggaggaaggctcggagtcggagtct
cgctcggtcaaagtgaagatcaagcttggccggaaagagaaggcccaggatcggctcaag
gggggccggcggcggccgagccgtgggtccagggccaagccggtggtgagcgatgatgac
agtgaggaggagcaggaggaggaccgctcaggaagtggcagtgaggaagactga
DBGET
integrated database retrieval system
