Sus scrofa (pig): 397175
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Entry
397175 CDS
T01009
Symbol
COL11A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
397175 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
397175 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
397175 (COL11A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
397175 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
397175
NCBI-ProteinID:
XP_001929407
Ensembl:
ENSSSCG00000006857
LinkDB
All DBs
Position
4:115638381..115841679
Genome browser
AA seq
1806 aa
AA seq
DB search
MERWSSRWKTKRWLWDFTITTLALTFLFQAREVRGAAPVDVLKALDFHNSPEGISKTTGF
CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTVKPKKGIQSFLLSIYN
EHGIQQVGIEVGRSPVFLYEDHMGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSAPKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAESVTETPTVTEETIAQTEA
NIIDDFQEYNYGTVESYQTEAPQHVSGSNEPNPVEEVFTEEYLTGEDYDSQRKNSEDTLY
ENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSPTIEEFGPGVPAETDITETSINGHG
AYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLXGPTGPPGDPGERGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR
GFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP
GLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKD
GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEA
GNPGXPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK
GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGAQGSTGAKGDGGIPGPAGPIGPP
GPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTES
MQADAGDTILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDG
EYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDE
EMSYDNNPYIKALYDGCASRKGYEKTVIEINTPKIDQVPVVDVMINDFGDQNQKFGFEVG
PVCFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccataaca
actctggcactgactttcctcttccaggctagagaggtcagaggagctgctccagttgat
gtactaaaagctctagattttcacaattctccagaggggatatcaaaaacaacaggcttt
tgcacaaacagaaagaattcgaaaggttcagatactgcttacagagtttcaaagcaagca
caactcagtgccccaacgaaacagttattttcaggaggaacatttccagaagatttttca
atattatttacagtaaaacccaaaaagggaattcagtctttccttttatctatatataat
gagcatggtattcagcaagtcggtattgaggttgggcgatcacctgttttcctgtatgag
gaccacatgggaaaacctgccccagaagactaccccctcttcagaactgttaacatcgct
gatggaaagtggcaccgggtagcaatcagtgtggagaagaaaactgtgacaatgattgtc
gattgtaagaagaaaaccacaaaaccacttgacagaagtgagagagcaatcgttgacacc
aatggaattacggtttttggaacaagaattttggatgaagaagtttttgagggggacatc
cagcagttgttgatcataggtgaccccaaagcggcatatgactactgcgagcattacagt
ccagactgtgactcctcagcgcccaaggctgctcaggctcaggaacctcagatcgatgag
tatgcacctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag
gctgaaagtgtaacagagacacctactgtaactgaagagacaatagcacaaactgaggca
aatattattgatgattttcaagaatacaactatggaacagtggaaagttaccagacagag
gctcctcagcatgtatctggatcaaatgagccaaatccagttgaagaagtatttactgaa
gaatatctaactggagaggattatgattcccagaggaaaaattcggaggatacactatat
gaaaacaaagaaatagacggcagggactctgatcttctggtagatggagatttaggagaa
tatgatttttatgaatataaagaatatgaagataaaccaacaagccccactattgaagaa
tttggtccaggtgttccagcagaaacagatattacagaaacaagcataaatggccatggt
gcgtatggagaaaaaggacagaaaggagaaccagcagtagttgaacctggtatgcttatt
gaaggaccaccagggccagcaggacctgcgggtcttatgggtcctccaggtctancaggc
cccacgggaccccctggtgaccctggcgagaggggtcccccaggacgtcctggtttacca
ggggctgatggtttgcctggtcctcctggtaccatgttaatgttaccgtttcgttatggt
ggcgatggttccaaaggaccaaccatctctgctcaggaagctcaagcccaggcgattctt
cagcaggctaggattgctctgagaggtccacctggtcccatgggtctcactggaagaccc
ggtcctgtggggggtcctggttcatctggggccaaaggcgagagtggtgaaccaggtcct
cagggccctcgtggtgtccaaggtcctcctggtccgacaggaaaacctggaaaaaggggc
cgtcctggtgctgatggaggaagaggaatgccaggagaacctggggcgaagggggatcga
ggatttgatggacttccaggtctgccaggtgacaagggtcacaggggtgaacgaggtccc
caaggtcctcctggtcctcctggtgaagatggaatgaggggagaagatggagaaatagga
ccaaggggtcttccaggtgaagctggtccacgaggtttgctgggaccaaggggaacacca
ggacctacaggacagcctggcattgcaggtgtagatggccccccaggaccaaaagggaac
atgggtccgcagggggagcctggacctccaggtcagcaaggaaatccaggacctcaaggt
cttcctggtccacaaggtccaattggtcctcctggtgaaaaaggaccacaaggaaaacca
gggcttgcgggacttcctggtgctgatgggcctcctggtcaccctggaaaagaaggccag
tctggagaaaagggttctctgggtcctcctggcccacaaggtcctattggctaccctggt
ccccgaggagtaaagggagcagatggtgtcagaggtctcaagggctctaaaggtgaaaag
ggtgaagatggttttccaggattcaaaggcgacatgggtctcaaaggtgacagaggggaa
gttggtcaagtaggtccaagaggagaagatggccctgaagggcccaaaggtcgagcaggt
ccaactggagacccgggtccttctggtcaagcaggagaaaaggggaaacttggtgttcca
ggattaccaggatatccgggaagacaaggtccaaagggttccaccggatttcccgggttt
ccaggtgccaatggagagaaaggtgcacggggtgtggctggcaaaccaggcccccggggt
cagcgtggtccaacgggtcctcgaggttcaagaggtgcgagaggtcccactgggaaacct
ggtccaaagggcacttcaggtggtgatggccctcctggccctcctggtgaaagaggtcct
caaggacctcagggaccagttggattccctggaccaaaaggccctcctggaccacctggg
aaggatggcctgccaggacaccctgggcaacgtggagagactggatttcaaggcaagact
ggccctcctggaccaggaggtgttgttggaccacagggaccaactggtgagactggtcca
ataggtgaacgggggcatcctggccctcctggccctcctggtgagcaaggtcttcctggt
gctgcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtgtctcagggaaagat
ggaccagcaggactacgtggctttccaggtgaacgaggacttcctggagctcagggtgca
cctggactgaaaggaggagaaggtccccagggcccaccaggtccagttggctcaccagga
gaacgtggatcagcaggaacagctggcccaattggtttgccagggcggccgggacctcag
ggccctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccccaaggtccc
gcggggagagatggcgtccaaggccctgtgggtctcccagggcctgcagggcctgctggg
tcccctggagaagatggagacaagggtgaaattggtgaaccaggacaaaaaggcagcaaa
ggtgacaaaggagaaaacggtcctcccggtcccccaggtcttcaaggcccagttggtgcc
cctggaattgctggaggtgatggtgagccaggtcccagaggccagcaagggatgtttgga
caaaaaggtgatgagggtgccagaggtttcccaggacctcctggtcccataggccttcag
ggtctgccaggcccacctggtgaaaaaggtgaaaatggagatgttggtcccatgggtcca
cctggtcctccaggcccaagaggccctcaaggtcccaatggagctgatggcccacaaggc
cccccaggatccattggttcagttggtggtgttggagaaaagggtgaacctggagaagca
ggaaatccagggncccctggggaagcaggcacaggtggtcccaaaggagaaagaggagag
aaaggagaagctggtccacctggcgctgctggacctccaggtgctaagggaccacctggt
gacgacggccctaagggtaacccgggtcctgttgggtttcctggagatcctggtcctcct
ggggaacctggccctgcaggtcaagatggtgttggtggtgacaagggtgaggatggagat
cctggtcaaccaggtcctcctggtccatctggtgaggctggcccaccaggtcctcctgga
aaaaggggtcctcctggagctgcaggggcagagggaaggcaaggtgaaaaaggtgctaag
ggagaagcaggtgctgaaggtcctccaggaaaaactggcccagttggtcctcagggacct
gccggaaagcctggtccagagggtcttcggggcatccctggccctgtgggagaacaaggt
ctccctggagctgcaggccaagatgggccacctggtcctatgggacctcctggcttacct
ggtctcaaaggtgaccctggctccaagggtgagaagggacatcctggtttaattggcctg
attggtcctccaggagaacaaggtgaaaagggtgacagaggacttcctggagctcaagga
tctacaggagcaaaaggggatggaggaattccaggtcctgctggccccataggtccacct
ggtcctccaggcttaccaggtcctcaaggtccaaagggtaccaaaggctctactggaccc
gccggccagaagggtgacagtggtcttccagggcctcctgggcctccaggtccacctggt
gaagtcattcagcctttaccaatcttgtcacccaaaaaaacaagaagacatacagaaagc
atgcaagcagatgcaggtgatactattctcgattacactgatggaatggaggaaatattt
ggttccctcaattccttgaaacaagacatcgagcatatgaagtttccaatgggtacgcag
accaacccagcccgaacttgcaaagatctgcaactcagccatcctgacttcccagatggt
gaatattggatcgatcctaaccaaggttgctcaggagattccttcaaagtttactgtaat
ttcacatctggtggtgagacgtgcatttatcccgacaaaaaatcagagggggtaagaatt
tcatcatggccaaaggagaaacccggaagctggtttagcgaatttaagagaggaaaactg
ctttcgtatttagatgttgaaggcaattccattaatatggtacaaatgacattcctgaaa
cttctaactgcctctgctcggcaaaattttacctaccactgtcatcagtcagcagcctgg
tatgatgtgtcatcaggaagctatgacaaagcactgcggttcctgggatcaaatgatgag
gagatgtcctatgacaacaacccttacatcaaagccctgtatgatggctgtgcgtccaga
aaaggctatgaaaagactgtgattgaaatcaatacaccgaaaattgatcaagtacctgtt
gttgatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgtttgttttctgggctaa
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integrated database retrieval system
