Sporothrix schenckii: SPSK_00196
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Entry
SPSK_00196 CDS
T05555
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPSK_00196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssck03021
]
SPSK_00196
Enzymes [BR:
ssck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPSK_00196
Transcription machinery [BR:
ssck03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
SPSK_00196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
27662451
NCBI-ProteinID:
XP_016586561
UniProt:
A0A0F2M505
LinkDB
All DBs
Position
Unknown
AA seq
1743 aa
AA seq
DB search
MNVSQPVASSVESVEFTFLPTDEIRAASVRRIENDSTFDTLLNPVPGGLYDPALGSWGDS
LCTTCNLGQSMCPGHAGHIDLPVPVYHPVFMDQVLRLLRAECIYCHHFRLPPKEINRYAC
KLRLLQYSLIPEAMKIDAIGEDFHSLALPGLPRVDMECDDDGKSAIDNVSRARSIYVQQA
LQNQRVLTGDIRKGKHEGASELRRELVQQFLKDIVVGRQCARCKGISPSYRKDRSVKIFE
KPLNSKEQAKMAAGQFKARDALTLRPKSQRSNDTTVSDEGIADISLDSGSEDGSDVHADA
LDEYGNVVHKPVTNKPTSPQLQQRYISTQEVLERLRLLFANEQDVLQLIYNSRPRGRHAQ
STPDMFFIQALLVPPNKYRPEARTGDAQVTEAQQNSLYKAILGASFRVAEIHREISDAAT
KTPGRFSRDILSLHEAWSELQNSVNSLIDSTKNPAQGQNAKRIEDGIKQKLEKKEGLFRK
NMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKELQQAVINGTDT
WPGASAIENDNGQVVNLRGKSLEDRMALANQLLAPSNSGSSTMRGKKVYRHLSNGDVVLM
NRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEIARVEALQ
LADTDHQYLSGTQGKPLRGLIQDHISISVSLCGKDTFFHRGTYQDLVYSALRPESGHILG
DRIELVSPAVLKPVPRWTGKQVITTILKNVKPPNCAHLWMSGKSQVPENRWGSHTEEGYI
EFRDSVLISGILDKAHLGPSSGGFIHAVHEVYGASVAGKVLSCMGRLLTRLLNMRAFTCG
IDDLRLTPEGEANRSRELNGAQDAGLGVAAAYVSLKDQAPTDKDPELLRRLEDVMRDDSK
QEGLDLLMNKMSASVSSNVTKACLPVGLEKPFPHNHMQAMTISGAKGGNVNANLISCNLG
QQVLEGRRVPLMVSGKSLPCFPEFDTSLRAGGYIVNRFLTGIRPQEYYFHHMAGREGLID
TAVKTSRSGYLQRCLIKGMEGLEVAYDSSVRDSDGSLVQFLYGEDGLDVTKQKYLTDFSF
VLHNLESEMSDFKFSDPRTAGLFEHKDEFFKQSKRMLKRSNVNAGFADEPVNALVNPAKH
AFAMSEKFFGLMSTYVRENKDRLIKDKESRGDDQSTSRLPFDQASMGKRSVERVFAAKYL
RSQVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASANIST
PAMTLVLRPDLTHQEGEHFAKTIGMLPLSHILDKIAVKERVARGIGHPYSKIFDVRLDFF
ASDEYEAIYAVQASDVLDTVEKRLLPVLRKLITKATKQNEKGQSSASIPDVGVKAGVIEV
SRTGNEDSHGNDAQRDDGSDDDNDDGDNDATSAKQRGNRNEAVSYGPNDEEDDDIRIRME
RDATTEEDLPDDEGYVGSPRSVMTHNAQAGENERANDSEASDEEDSAQPGGDVQGDTEQG
GSEARQARVKSGNTNITRFRADENAGEWCEFTLELPADSPKILMLSVVEDAVRRSVVRQI
PGVKSCTYVADEVVKDSRTGIEVKVPVVHTEGANIRTIQQFSDFFDPNKLATNDIVAMLE
VYGVEACRNTIIRELSTVFVSHGIGVDNRHLNLIGDFMTRGGGFMPFNRYGLKGNVSPFT
KMSFETTLAFLKDALVDGDWDGLVTPSSRIVMGRLGKTGTGSFDVLTSVPIQHFDPMQGL
RTS
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtctcgcaacctgtcgcctcatcggtagaaagtgtcgagttcactttcctccca
accgacgagattcgagcagcctctgtccgaagaatagaaaacgacagcacttttgataca
cttctaaaccccgtacccgggggcctttatgaccctgctctaggctcttggggtgactcc
ctgtgtacgacatgcaaccttggtcagtccatgtgtcccggccatgcgggccatatcgat
cttccggtccctgtctaccacccagtcttcatggaccaggtcttacgactactccgcgct
gagtgtatctactgtcaccacttccgattgccaccaaaggaaatcaaccgatatgcctgt
aaactccggctgcttcaatacagtcttataccggaagcgatgaaaatcgatgctattgga
gaggacttccatagcctagcattacccggtctcccacgggtcgacatggagtgcgacgac
gacggcaagtctgcgatcgacaatgtgtctcgagcgagaagcatctacgtacagcaggca
ctgcaaaaccaaagagttctgaccggcgatatccgcaagggtaaacacgagggtgcttcc
gagcttcgccgagaactagttcagcaatttttaaaggatattgttgttggaagacagtgt
gctcgctgcaaaggcatctcgcctagctaccgaaaagaccgctctgttaaaatatttgaa
aaaccactgaactccaaggagcaggcaaagatggcggcaggacaatttaaggctcgcgat
gccctgacgcttcgaccaaagagccaacggtctaacgataccaccgtttctgacgaaggt
attgccgacatcagtctcgattctggtagcgaggatggcagcgacgtgcacgcggacgca
ttggatgaatatggcaacgttgttcacaaaccggttacaaacaagccgacatctccacag
ctccagcaacgctacattagcacccaggaggttcttgagcggctacgccttctcttcgcc
aatgaacaggacgttctgcaactcatctacaactccaggccgcgtggtcgtcacgcgcag
tccacaccggatatgtttttcattcaagccctgcttgtccccccgaacaagtatcggcca
gaggcgcgcaccggcgatgcacaagtcaccgaagcccagcaaaattccctttacaaagcg
atccttggagcatcttttcgcgtggctgagatccaccgcgagatatctgacgcagcaaca
aagaccccaggtcgtttctcaagggatattttgtctctccacgaggcctggtcagaactc
cagaattctgtcaactcccttatagacagtaccaaaaacccagcccaaggtcaaaacgcc
aagcggatcgaggacggcatcaaacaaaaattggaaaagaaagaggggctcttccgaaag
aacatgatgggtaaacgcgtcaatttcgcagcccgcagcgtcatctcacctgacccaaac
atcgaaacaaacgagattggtgtcccgcccgtttttgcacgcaagcttacataccccgaa
cccgtaacaagtcacaacttcaaggaacttcaacaggccgttatcaatggcacagacact
tggcctggggcgtctgcgatcgaaaatgacaatgggcaggtggtcaatctgagagggaaa
tctttggaagacagaatggctctcgcaaaccagctcctagcgccttccaacagcggaagt
tccaccatgaggggaaagaaagtttatcggcaccttagcaacggtgatgtggttcttatg
aaccgccagcccacccttcataagccgtccattatgggtcaccgagtcagagttttaccc
ggtgagaaaaccatccgtatgcattatgcaaattgcaacacatacaacgcggattttgac
ggtgatgagatgaacatgcatttcccacaaaacgaaatcgcacgtgttgaggcattacag
cttgcggacacagatcaccaatatttgtctggcacacaaggcaaaccactgcgaggtctc
atccaggatcacatttccatctcagtctcactctgcggcaaggacacctttttccacaga
gggacataccaggatcttgtctatagcgcactgcgccctgagagcggtcacattttgggg
gaccgcattgaacttgtcagtcctgccgtcttaaagcctgtgcctagatggactggtaaa
caggtgatcacaacgatcctaaagaacgtcaagccgccaaactgtgctcatctttggatg
agcggcaagagtcaagttcccgaaaacaggtggggttcacatacggaagagggttatatt
gagttccgagacagcgtcttaatctccggtattctcgataaagctcaccttggaccgagc
tctggtggtttcattcatgccgtccatgaagtttacggcgcctcggttgctgggaaggtt
ttgagctgcatgggtcgtttgttaacacgactactcaacatgcgggccttcacttgcgga
attgacgacctgcggttgacaccggaaggcgaggccaaccgtagtcgggagctgaatgga
gctcaagatgctgggctaggagttgctgcagcctatgtcagcctcaaagaccaagcgccg
acagataaagatcccgaacttcttcgccgtcttgaggatgtcatgcgagacgacagcaag
caggaaggcctcgacttgttaatgaacaagatgagtgctagcgtttcaagcaacgtgacc
aaggcatgtctcccggttggccttgaaaagccgtttccccacaaccacatgcaagccatg
accatctctggtgccaagggaggcaatgtgaacgcaaacttgatttcttgcaatcttggc
cagcaggttctggaaggccgacgggtcccactcatggttagcgggaagtctctaccatgc
tttcccgaatttgacacaagtttgagagccggtggctatattgtcaatcgctttcttacc
ggtattcgtccgcaagaatactattttcatcatatggctggtcgtgagggtctcattgat
acagcagtaaagacatcgcggtcgggctatcttcaacgatgcctgatcaaaggaatggag
ggtctcgaagtggcttacgactcatccgttcgtgactccgacggtagcctggttcaattc
ctctatggcgaagatgggcttgacgttaccaagcagaaatatctcaccgacttcagcttt
gtgctgcataacctcgaatccgaaatgtctgattttaagttttccgaccctcggacagcg
gggttatttgagcacaaggacgaatttttcaagcagagtaaacgcatgctgaagagatcg
aacgtgaacgcaggtttcgctgacgaaccggtcaatgctttggtcaaccctgccaagcac
gcttttgcgatgtcggagaaatttttcggcttgatgtcaacctatgtccgcgagaacaag
gaccgcctcattaaggacaaggaatcaagaggcgatgaccagtctacttcacgtctgccg
ttcgatcaagcctcgatggggaaacgatcggtagagagggtgtttgctgcgaagtacctc
cggtcgcaggtcgagcctggcgaggctgttggcattgtcgccgggcaatctgtcggtgaa
ccctcgacgcaaatgaccttgaacacatttcatttggcagggcattccgcaaagaatgtc
acactgggtattcctcgtctcagagaaattttgatgactgccagtgccaacatttcaaca
ccggcgatgaccctagttcttcgaccggacttgacacatcaggaaggtgaacattttgcg
aaaactattggtatgcttccactctcgcatattctcgacaagatagcagtcaaagagcgt
gtcgccagaggcattggccatccatattcaaagatattcgacgttcggctcgattttttc
gcctcggacgaatatgaggcaatatatgctgttcaagcgtccgatgttttggatacggtt
gaaaagaggcttctaccggtgctgcgaaagctcatcaccaaggcgacgaagcagaatgag
aaaggtcaatctagcgccagcatacctgacgtcggtgtcaaggcaggcgtgatcgaagtc
tctcgcaccggtaacgaagatagccatggcaacgatgcacaaagggacgacggcagcgat
gatgacaatgacgatggtgacaacgatgcaacgagtgctaagcagcgcgggaaccgaaac
gaggctgtttcatacggaccaaacgacgaggaggatgatgacattcgtattcgcatggag
cgggatgccacgacggaagaagatctccccgacgacgaaggctacgtggggagcccgcgg
tctgtgatgactcacaatgctcaggcaggcgaaaatgaacgtgcaaatgatagcgaggca
agcgacgaagaagatagtgcgcaaccaggcggagatgtgcaaggcgacacggaacagggt
ggttcggaggctcgccaagccagggtcaaaagtggcaacaccaatatcacacgtttccgt
gcggacgaaaatgctggtgaatggtgtgagtttacgcttgaactacctgccgactctccc
aaaatactgatgctcagtgtcgtggaagatgcggtacgacgatcggtagtacgccaaatc
cctggggtgaagtcttgcacatatgttgccgacgaggttgtgaaggactcgcgtactggg
atagaagttaaggtcccggtcgtgcacacggagggcgccaatatccgaaccatacaacaa
tttagcgatttcttcgaccctaacaagttggccacgaacgacattgtggccatgttagaa
gtttacggtgttgaagcctgccggaacaccatcattcgagaattgagcacagttttcgtc
tctcacggtatcggtgtggacaaccgccatctcaatctaattggcgatttcatgacccgt
ggtggtggctttatgccgtttaaccgctacggtttgaaaggaaatgtgagcccttttacg
aagatgagctttgagactacacttgcgtttttgaaggatgcattggttgacggtgactgg
gacggcctcgttaccccgagtagccgcattgtgatgggcagactgggcaagacaggaaca
ggctcatttgatgtcttgaccagtgttccaatacagcactttgacccgatgcaagggctt
cggacgagctag
DBGET
integrated database retrieval system
