Staphylococcus schleiferi 2317-03: RN70_03985
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Entry
RN70_03985 CDS
T04520
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sscz
Staphylococcus schleiferi 2317-03
Pathway
sscz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN70_03985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscz03019
]
RN70_03985
03009 Ribosome biogenesis [BR:
sscz03009
]
RN70_03985
Enzymes [BR:
sscz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RN70_03985
Messenger RNA biogenesis [BR:
sscz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RN70_03985
Ribosome biogenesis [BR:
sscz03009
]
Prokaryotic type
rRNA helicases
RN70_03985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
CMS1
AAA_30
SUa-2TM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKS73140
UniProt:
A0A0K0ZZG7
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All DBs
Position
895332..896819
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AA seq
495 aa
AA seq
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MQNFTNLGVSERTAETLEAMGFTEPTPIQKDSIPYALENIDILGQAQTGTGKTGAFGIPL
IEKVIGKEGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRGP
QIVVGTPGRVIDHLNRRTLKTQSIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTML
FSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIEQTNR
RQMRALRPPHRKEVLKAREDEIKSKVQNWMEADKEPRVENIAKQLLETYDQTELVTALLQ
ELVESNDEVEVQLTFEKPLARKNRSPKGNRKVGNNKRHSKSNRNFKQNNNNKKGNFKHKR
ETKVKKGRTFADHQK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttacaaatttaggtgtttcagaacgtacagctgaaaccctcgaggcaatg
ggttttacagagccgacacccatccaaaaagatagtatcccatatgcactcgaaaacatc
gatatattaggacaagcgcaaactggaacagggaaaacaggtgcgtttggtattccactt
attgaaaaagtaattggaaaagaaggtgtgcgtgctttgatcttagcacctacacgtgaa
ttagcgatgcaagtggctgaacaattaagagaatttagtcgtgggcaaaaagttcaagtt
gtcactgtttttggcggtatgccaattgatcgtcaaatcaaatctttaaaacgcggacca
caaatcgttgtaggtacacctgggcgtgtgattgatcaccttaatcgtcgtactttaaaa
acgcaatctatcgaaacattaattttggacgaagcagatgaaatgatgaatatgggcttc
atcgatgatatgcgttatattatggataaattaccgtctgaaaaccgtcaaacaatgttg
ttctcagcaacaatgccaaaggcaatacaagaattggttcaaaaattcatgaaatcacca
agaattattaaaacgatgaacaatgaaatttctgatccacaaattgacgagtattataca
attgtgaaagagttagagaaatttgatacgtttacgaacttcttagacgttcatcaacct
gaattggctattgtatttggacgtacaaaacgtcgtgtagatgaattaacaagtgcatta
ttatctaaaggttataaagcagaaggtttacacggtgatattactcaggcgaaacgtctt
gaagttttgaaaaaatttaaaaatgatcaaattgatattttagtagctacagatgtggca
gcgagaggacttgatatttcaggtgtaagccacgtatataactttgatatccctcaagat
actgaaagctatacacaccgtattggccgtacaggacgtgcaggtaaacatggtatcgct
gttacttttgttaacccaattgaaatggattatatccgtcaaatcgagcaaacgaatcgc
cgtcaaatgcgcgcattaagaccgccacatcgtaaagaagttttaaaagcacgcgaagat
gaaataaaaagtaaggttcaaaattggatggaagctgataaagaaccacgtgtagaaaat
attgcgaaacagttattagaaacttacgatcaaactgaacttgtcacagcattattgcaa
gaacttgttgaatcaaatgatgaggttgaagtacaacttacatttgaaaaacctttagca
cgtaaaaatcgttcgccaaaaggaaatcgaaaagtaggcaataataagcgtcactctaaa
tcaaatcgcaattttaaacaaaacaataacaacaaaaaaggtaacttcaaacataaaaga
gaaacaaaagtgaagaagggccgcacttttgcagatcatcaaaaatag
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