Shewanella sediminis: Ssed_1219
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Entry
Ssed_1219 CDS
T00596
Definition
(GenBank) A/G-specific adenine glycosylase
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
sse
Shewanella sediminis
Pathway
sse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ssed_1219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_1219
Enzymes [BR:
sse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
Ssed_1219
DNA repair and recombination proteins [BR:
sse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ssed_1219
Prokaryotic type
Ssed_1219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_4
HhH-GPD
HHH
Whib
EndIII_4Fe-2S
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABV35830
UniProt:
A8FSK7
LinkDB
All DBs
Position
complement(1452845..1453957)
Genome map
AA seq
370 aa
AA seq
DB search
MMTNLNVPNMPPNNSTPSSSRSFSTRIVDWYDKFGRKHLPWQIDKTPYKVWVSEIMLQQT
QVSTVIPYYLKFMERFPDIQSLADAPQDEVLHHWTGLGYYARARNLHKSAQMIRDEHAGS
FPTHFEQVLALPGIGRSTAGAVLSLSLAQHHPILDGNVKRVLARHGAIEGWPGKKTVENR
LWELTDKLTPQQDVQKYNQAMMDIGASVCSRSKPACSECPVAIDCQAQLSGRQTEYPGKK
PKKMTPERNAFMLVLSKGGDTLLEKRPPAGIWGGLWCFPEFSSRQELEVYLVENGLDSAE
MEDLPGFRHTFSHFHLDITPIYIHVDDWRDNLIMEDKPSLWYNLPNPPKVGLAAATERIL
ASLGSVLIKE
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaaatttaaatgttcctaatatgccgccaaataactccacaccttccagcagc
agatctttctctacccgcatcgtcgactggtacgataaatttggccgtaaacacctgccc
tggcagatagataagaccccctataaggtatgggtatcggagatcatgctgcaacaaacc
caagttagcactgtgatcccttactatctgaagtttatggaacgttttccggacatacaa
tcactcgcggatgcaccgcaggatgaggtacttcaccactggaccgggctcggttattac
gctcgcgcacgaaatctgcataagtctgctcaaatgatccgcgatgaacacgccggtagt
tttccaacccactttgaacaggtgctggcgcttcccggcataggtcgctcgactgccgga
gcggtattatcactctcattggcacagcatcatccgatactcgacggtaacgtaaaacgc
gtgctagcccgtcacggcgctatcgaaggttggccgggaaaaaagactgtcgaaaacaga
ctctgggagttaaccgacaaattaactccgcaacaagatgtacagaaatataatcaggcc
atgatggatattggcgcttcggtttgctctcgttctaaacctgcttgttctgaatgcccg
gtagcaatcgattgtcaggctcaattatcaggcagacagaccgaatatccgggtaaaaag
cctaagaaaatgacacctgaaagaaatgccttcatgttggtcttatcaaaagggggtgac
accctgctagagaaacgtcctcctgcggggatatggggaggattatggtgcttccccgag
ttctcgagccgccaagaattagaggtatatctggtcgaaaatgggttagactcagctgaa
atggaagacttaccaggctttaggcatactttcagccactttcatctggatatcacccca
atttatattcatgtcgacgactggagagataacctgatcatggaagataagccttcactc
tggtataacttacccaatccccctaaagttggtttagctgctgcaacagagcgaattctg
gccagcttaggttctgtattaattaaggagtaa
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